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Report for CCDS47661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47661.1 Public Homo sapiens 7 SPACDR 24 110 108 CCDS HistoryNCBI Gene:402573Re-query CCDS DB by CCDS ID:47661.1Re-query CCDS DB by GeneID:402573See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332375.4 ENSP00000327732.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332375.4Link to Ensembl Protein Viewer:ENSP00000327732.3Re-query CCDS DB by Nucleotide ID:ENST00000332375Re-query CCDS DB by Protein ID:ENSP00000327732
Original member Current member NCBI NM_001004323.3 NP_001004323.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004323.3Link to Protein Sequence:NP_001004323.1Re-query CCDS DB by Nucleotide ID:NM_001004323Re-query CCDS DB by Protein ID:NP_001004323Link to BLAST:NP_001004323.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004323.1 206 Q8IZ16 206 100% 0 0

Chromosomal Locations for CCDS 47661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100456752 100456985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100463363 100463686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100463963 100464025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGTTGTGGTCATGAAGTTCTTCCGATGGGTTAGACGGGCTTGGCAAAGGATTATTTCCTGGGTTTTCT
TCTGGAGGCAAAAAATTAAACCAACCATCTCAGGACACCCTGACTCCAAGAAACACTCATTGAAGAAGAT
GGAGAAGACTCTCCAGGTGGTTGAGACTTTGAGGTTGGTCGAGCTCCCAAAAGAGGCTAAGCCCAAGTTG
GGTGAGTCCCCCGAGCTGGCAGATCCCTGCGTGTTGGCCAAGACTACAGAGGAGACCGAGGTGGAGCTGG
GCCAACAGGGCCAATCCCTACTGCAGCTGCCGAGGACGGCCGTCAAGTCTGTCTCCACGCTCATGGTCTC
TGCCCTGCAGAGCGGCTGGCAGATGTGCAGCTGGAAGTCATCAGTGAGTTCTGCCTCAGTCAGCTCCCAA
GTGAGGACGCAGTCACCTTTGAAGACTCCGGAGGCTGAGTTGCTGTGGGAGGTGTACCTGGTGCTGTGGG
CCGTTCGGAAACACCTGCGCCGGCTGTACCGCAGGCAGGAGAGGCACAGACGGCACCACGTCCGATGCCA
TGCTGCCCCCCGACCCAACCCGGCTCAGTCCCTGAAACTGGATGCCCAAAGTCCCCTCTAG

Translation (206 aa):
MVVVMKFFRWVRRAWQRIISWVFFWRQKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKL
GESPELADPCVLAKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQSGWQMCSWKSSVSSASVSSQ
VRTQSPLKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAAPRPNPAQSLKLDAQSPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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