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Report for CCDS47666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47666.1 Public Homo sapiens 7 SRRT 24 110 108 CCDS HistoryNCBI Gene:51593Re-query CCDS DB by CCDS ID:47666.1Re-query CCDS DB by GeneID:51593See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614484.4 ENSP00000481173.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614484.4Link to Ensembl Protein Viewer:ENSP00000481173.1Re-query CCDS DB by Nucleotide ID:ENST00000614484Re-query CCDS DB by Protein ID:ENSP00000481173
Original member Current member NCBI NM_001128852.2 NP_001122324.1 Accepted alive Link to Nucleotide Sequence:NM_001128852.2Link to Protein Sequence:NP_001122324.1Re-query CCDS DB by Nucleotide ID:NM_001128852Re-query CCDS DB by Protein ID:NP_001122324Link to BLAST:NP_001122324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122324.1 875 Q9BXP5-3 875 100% 0 0

Chromosomal Locations for CCDS 47666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100875591 100875712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100881285 100881413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100881659 100881805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100882053 100882241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884070 100884239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884368 100884552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884740 100884838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884923 100885040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100885216 100885370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100885701 100885762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100885863 100885941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100886247 100886435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100886795 100886968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100887047 100887200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100887320 100887513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100887703 100887859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100888042 100888143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100888257 100888383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100888474 100888549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGGGTGACAGTGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTCAGAAGAGAGCGCAGCGACTACG
AC
CGTTCCCGCGAGAGAGATGAAAGACGTCGAGGGGACGATTGGAATGACAGAGAGTGGGACCGTGGCCG
T
GAGCGCCGTAGTCGGGGTGAATATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCACCTCGC
CAC
GAACTCAGCCCGCCACAGAAGCGCATGAGGAGAGACTGGGATGAGCACAGCTCTGACCCATACCACA
GT
GGCTATGAGATGCCCTATGCTGGGGGGGGTGGGGGCCCAACTTATGGCCCCCCTCAGCCCTGGGGCCA
C
CCTGACGTCCACATCATGCAGCACCATGTCCTGCCTATCCAGGCCAGGCTGGGCAGCATTGCAGAGATT
GAC
CTGGGTGTGCCGCCGCCCGTGATGAAGACCTTCAAGGAGTTTCTCCTCTCCCTGGATGACTCGGTGG
AT
GAGACGGAGGCCGTCAAGCGCTATAATGACTACAAGCTGGATTTCCGGAGGCAACAGATGCAGGATTT
C
TTCCTGGCGCACAAAGATGAGGAGTGGTTTCGGTCTAAGTACCACCCAGATGAGGTGGGGAAGCGTCGG
CAG
GAGGCCCGGGGGGCCCTGCAAAACCGACTGAGGGTCTTCCTGTCCCTCATGGAGACTGGCTGGTTTG
AT
AACCTTCTCCTGGACATAGACAAAGCTGATGCCATTGTCAAGATGCTGGATGCAGCCGTGATTAAGAT
G
GAAGGAGGCACGGAGAATGATCTTCGCATCCTGGAGCAGGAGGAGGAGGAGGAGCAGGCAGGAAAGCCT
GGG
GAGCCCAGCAAGAAAGAAGAAGGACGGGCTGGAGCAGGCCTAGGGGACGGGGAGCGCAAAACCAACG
AC
AAGGATGAGAAGAAGGAAGACGGCAAGCAGGCTGAGAATGACAGTTCTAATGATGACAAAACAAAGAA
G
TCGGAGGGTGATGGGGACAAGGAAGAGAAGAAAGAAGACTCCGAGAAGGAAGCCAAAAAGAGTAGCAAG
AAG
CGGAACCGGAAGCACAGTGGTGACGACAGCTTTGACGAGGGCAGCGTGTCAGAGTCTGAGTCGGAGT
CA
GAGAGCGGCCAGGCTGAGGAGGAGAAGGAGGAGGCCGAAGCGCTCAAGGAGAAGGAGAAGCCCAAGGA
A
GAAGAATGGGAGAAGCCCAAGGACGCCGCGGGGCTGGAGTGCAAGCCGCGGCCGCTGCATAAGACCTGC
TCC
CTCTTCATGCGCAACATCGCGCCCAACATCTCCCGGGCCGAGATCATCTCCCTTTGTAAAAGGTACC
CA
GGCTTTATGCGGGTGGCGCTCTCAGAGCCCCAGCCAGAGAGGAGGTTTTTCCGTCGTGGCTGGGTGAC
C
TTCGACCGCAGTGTTAACATTAAAGAGATCTGTTGGAACCTGCAGAACATCCGTCTCCGGGAGTGTGAG
CTG
AGCCCTGGTGTGAACAGGGACCTGACCCGGCGCGTTCGCAACATCAACGGCATCACCCAGCACAAGC
AG
ATTGTGCGCAACGACATCAAGCTGGCGGCCAAGCTGATCCACACGCTGGATGACAGGACACAGCTTTG
G
GCCTCAGAACCAGGGACGCCTCCCCTGCCCACGAGCCTGCCCTCGCAAAACCCGATCTTGAAGAATATC
ACC
GACTACCTGATCGAGGAAGTAAGCGCCGAGGAGGAGGAGCTGCTGGGGAGCAGCGGGGGCGCTCCTC
CT
GAGGAGCCTCCTAAGGAAGGGAACCCGGCAGAGATCAACGTGGAGCGGGATGAGAAGTTGATTAAGGT
C
TTGGACAAGCTCCTCCTTTACCTGCGCATCGTGCATTCCTTGGATTATTACAACACCTGTGAGTACCCC
AAC
GAGGACGAGATGCCCAATCGCTGTGGGATCATCCACGTTCGGGGGCCCATGCCACCCAACCGCATCA
GT
CACGGGGAAGTGCTGGAGTGGCAGAAGACTTTTGAGGAGAAGCTCACGCCGTTGCTGAGTGTGCGGGA
G
TCACTCTCAGAGGAAGAGGCCCAGAAGATGGGGCGCAAAGACCCAGAGCAGGAAGTGGAGAAGTTCGTC
ACC
TCCAACACGCAGGAACTGGGCAAGGATAAGTGGCTGTGTCCTCTCAGTGGCAAGAAATTCAAGGGTC
CT
GAGTTTGTGCGCAAACATATCTTCAACAAGCATGCAGAGAAAATTGAGGAAGTGAAAAAGGAAGTCGC
G
TTTTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTCTGCCTGAGATCAAGCCAGCCCAGCCACCT
GGC
CCCGCCCAGATACTCCCCCCAGGTTTGACCCCAGGACTCCCCTACCCACACCAGACTCCCCAGGGCC
TG
ATGCCCTATGGTCAGCCCCGGCCCCCGATCTTGGGCTATGGAGCTGGTGCTGTCCGCCCTGCAGTCCC
C
ACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTGGTCGAGGGAACTATGATGCCTTCCGAGGC
CAG
GGAGGTTATCCTGGGAAACCTCGCAACAGGATGGTTCGTGGAGACCCAAGGGCCATTGTGGAATATC
GG
GACCTGGATGCCCCAGACGATGTTGATTTCTTTTGA


Translation (875 aa):
MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPR
H
ELSPPQKRMRRD
WDEHSSDPYHSGYEMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEI
D
LGVPPPVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEE
WFRSKYHPDEVGKRR
Q
EARGALQNRLRVFLSLMETGWFDNLLLDIDKADAIVKMLDA
AVIKMEGGTENDLRILEQEEEEEQAGKP
G
EPSKKEEGRAGAGLGDGERKTNDKDEKKEDGKQ
AENDSSNDDKTKKSEGDGDKEEKKEDSEKEAKKSSK
K
RNRKHSGDDSFDEGSVSESESESESGQAEEEKEEA
EALKEKEKPKEEEWEKPKDAAGLECKPRPLHKTC
S
LFMRNIAPNISRAEIIS
LCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECE
L
SPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPLPT
SLPSQNPILKNI
T
DYLIEEVSAEEEELLGSSGGAPPEEPPKEGNPAEINVERDEKLIK
VLDKLLLYLRIVHSLDYYNTCEYP
N
EDEMPNRCGIIHVRGPMPPNRISHGE
VLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFV
T
SNTQELGKDKWLCPLSGKKFK
GPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPAQPP
G
PAQ
ILPPGLTPGLPYPHQTPQGLMPYGQPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNYDAFRG
Q
GGYPGKPRN
RMVRGDPRAIVEYRDLDAPDDVDFF



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser