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Report for CCDS47684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47684.1 Public Homo sapiens 7 CDHR3 24 110 108 CCDS HistoryNCBI Gene:222256Re-query CCDS DB by CCDS ID:47684.1Re-query CCDS DB by GeneID:222256See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47684.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317716.14 ENSP00000325954.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317716.14Link to Ensembl Protein Viewer:ENSP00000325954.9Re-query CCDS DB by Nucleotide ID:ENST00000317716Re-query CCDS DB by Protein ID:ENSP00000325954
Original member Current member NCBI NM_152750.5 NP_689963.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152750.5Link to Protein Sequence:NP_689963.2Re-query CCDS DB by Nucleotide ID:NM_152750Re-query CCDS DB by Protein ID:NP_689963Link to BLAST:NP_689963.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689963.2 885 Q6ZTQ4-1 885 100% 0 0

Chromosomal Locations for CCDS 47684.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105963319 105963364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105974844 105975046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105980968 105981133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105984192 105984289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105994751 105994845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105996250 105996354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106001462 106001610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106004498 106004687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106012860 106013031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106015111 106015213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106015927 106016025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106017846 106018072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106020373 106020544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106022198 106022448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106024381 106024562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106026682 106026695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106028551 106028582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106030792 106030840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106032393 106032697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2658 nt):
ATGCAGGAAGCAATCATTCTCCTGGCTCTCCTGGGTGCCATGTCAGGGGGAGAAGCACTACACCTAATCC
TCTTACCTGCTACAGGCAATGTGGCAGAGAATTCTCCACCTGGGACTTCAGTGCACAAGTTTTCTGTGAA
GTTATCAGCATCATTGTCACCTGTGATCCCAGGATTTCCCCAGATAGTCAACTCAAATCCCCTCACTGAA
GCTTTTAGGGTGAATTGGCTGTCAGGCACCTACTTTGAGGTTGTCACCACTGGGATGGAACAACTAGATT
TTGAAACAGGACCAAACATATTTGATTTGCAGATTTATGTGAAGGATGAGGTTGGTGTCACAGACCTGCA
AGTCCTGACTGTCCAGGTAACAGATGTGAACGAGCCACCTCAGTTTCAAGGCAACTTGGCAGAAGGTCTA
CACCTCTACATAGTAGAAAGAGCAAACCCTGGATTCATTTACCAGGTTGAGGCCTTCGATCCAGAAGACA
CAAGCCGAAACATTCCCCTCAGTTATTTCCTGATTTCTCCCCCAAAGAGCTTCAGAATGTCTGCTAATGG
CACCCTCTTCTCCACAACAGAATTGGACTTTGAAGCAGGACACAGAAGTTTCCATCTCATCGTGGAGGTG
AGGGACAGTGGAGGCCTCAAAGCCTCCACAGAGCTCCAGGTGAACATCGTGAACCTCAACGACGAAGTCC
CTCGCTTTACCAGCCCGACACGAGTGTACACAGTCCTGGAGGAACTGAGTCCAGGAACCATCGTGGCCAA
TATCACAGCGGAGGATCCTGATGATGAAGGTTTTCCCAGCCACCTCCTCTACAGCATTACCACTGTTAGC
AAATATTTCATGATAAATCAGTTGACTGGTACAATCCAAGTGGCCCAAAGGATAGACCGAGATGCAGGTG
AATTGAGACAAAATCCCACCATTTCCCTGGAAGTTCTAGTGAAGGACAGACCATATGGGGGTCAGGAGAA
TCGCATCCAGATAACCTTCATTGTGGAAGACGTCAACGACAATCCTGCCACATGCCAAAAGTTCACCTTC
AGCATTATGGTGCCGGAAAGAACAGCCAAGGGGACGTTGCTTCTTGACCTAAACAAGTTCTGCTTTGATG
ATGACAGTGAGGCACCAAACAACAGATTCAACTTCACCATGCCATCTGGAGTGGGGAGCGGCAGCAGATT
TTTACAGGATCCAGCTGGCTCTGGGAAGATTGTGCTGATTGGTGATCTAGACTACGAAAATCCAAGTAAC
CTAGCAGCCGGCAATAAATATACGGTGATAATCCAGGTGCAGGATGTGGCCCCCCCTTACTATAAAAATA
ACGTCTACGTTTATATCCTAACAAGCCCAGAAAATGAGTTTCCTCTCATTTTTGATAGGCCATCCTATGT
ATTTGATGTGTCAGAAAGAAGGCCCGCCAGAACCCGAGTGGGACAGGTGCGAGCCACTGATAAAGACCTC
CCCCAGAGCAGCCTCCTGTACTCCATCTCCACTGGAGGGGCCAGCCTCCAGTATCCAAATGTATTTTGGA
TTAATCCCAAGACAGGAGAACTCCAGCTGGTAACTAAAGTGGACTGTGAAACAACCCCCATCTATATTCT
CAGAATCCAGGCCACCAACAACGAAGACACAAGCTCTGTCACTGTTACTGTGAACATCCTTGAAGAAAAT
GATGAAAAGCCAATTTGTACTCCAAACTCTTATTTCCTGGCCCTCCCAGTGGATCTGAAAGTTGGCACAA
ATATTCAGAATTTCAAGCTGACATGTACCGACCTTGATTCCAGCCCCAGATCTTTCCGTTATTCCATTGG
CCCAGGTAACGTCAACAATCATTTCACCTTCTCTCCCAATGCTGGTTCCAATGTCACACGCCTGCTGCTT
ACATCTCGCTTTGACTATGCTGGTGGGTTTGATAAGATCTGGGACTACAAGCTACTTGTCTACGTAACTG
ATGACAACTTGATGTCTGACAGGAAGAAAGCGGAGGCTCTTGTTGAGACAGGAACAGTGACACTGAGTAT
TAAAGTCATTCCCCACCCAACCACTATCATCACCACGACCCCCAGGCCCAGGGTCACCTATCAGGTCCTG
AGGAAAAACGTTTACTCTCCATCTGCATGGTACGTGCCGTTTGTCATCACTTTGGGCTCCATATTGCTTC
TGGGTCTCCTCGTGTACCTGGTCGTCCTATTGGCCAAAGCCATCCACAGACACTGCCCCTGCAAGACTGG
GAAGAACAAGGAACCTCTGACAAAGAAAGGAGAAACGAAGACTGCAGAGAGAGACGTCGTGGTGGAAACT
ATCCAGATGAACACTATCTTTGATGGAGAAGCCATAGATCCAGTGACCGGGGAAACATATGAATTCAACT
CAAAAACTGGAGCCAGAAAGTGGAAAGATCCACTAACCCAAATGCCAAAATGGAAAGAGTCCAGCCACCA
GGGAGCTGCCCCACGCAGAGTCACTGCTGGGGAAGGGATGGGGTCACTGAGAAGTGCCAACTGGGAAGAA
GATGAGCTGAGTGGCAAAGCGTGGGCTGAGGATGCTGGTCTGGGTTCCAGAAATGAGGGTGGCAAGCTGG
GCAACCCAAAGAACAGAAATCCAGCCTTCATGAACAGGGCTTACCCCAAACCACACCCAGGAAAGTAA

Translation (885 aa):
MQEAIILLALLGAMSGGEALHLILLPATGNVAENSPPGTSVHKFSVKLSASLSPVIPGFPQIVNSNPLTE
AFRVNWLSGTYFEVVTTGMEQLDFETGPNIFDLQIYVKDEVGVTDLQVLTVQVTDVNEPPQFQGNLAEGL
HLYIVERANPGFIYQVEAFDPEDTSRNIPLSYFLISPPKSFRMSANGTLFSTTELDFEAGHRSFHLIVEV
RDSGGLKASTELQVNIVNLNDEVPRFTSPTRVYTVLEELSPGTIVANITAEDPDDEGFPSHLLYSITTVS
KYFMINQLTGTIQVAQRIDRDAGELRQNPTISLEVLVKDRPYGGQENRIQITFIVEDVNDNPATCQKFTF
SIMVPERTAKGTLLLDLNKFCFDDDSEAPNNRFNFTMPSGVGSGSRFLQDPAGSGKIVLIGDLDYENPSN
LAAGNKYTVIIQVQDVAPPYYKNNVYVYILTSPENEFPLIFDRPSYVFDVSERRPARTRVGQVRATDKDL
PQSSLLYSISTGGASLQYPNVFWINPKTGELQLVTKVDCETTPIYILRIQATNNEDTSSVTVTVNILEEN
DEKPICTPNSYFLALPVDLKVGTNIQNFKLTCTDLDSSPRSFRYSIGPGNVNNHFTFSPNAGSNVTRLLL
TSRFDYAGGFDKIWDYKLLVYVTDDNLMSDRKKAEALVETGTVTLSIKVIPHPTTIITTTPRPRVTYQVL
RKNVYSPSAWYVPFVITLGSILLLGLLVYLVVLLAKAIHRHCPCKTGKNKEPLTKKGETKTAERDVVVET
IQMNTIFDGEAIDPVTGETYEFNSKTGARKWKDPLTQMPKWKESSHQGAAPRRVTAGEGMGSLRSANWEE
DELSGKAWAEDAGLGSRNEGGKLGNPKNRNPAFMNRAYPKPHPGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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