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Report for CCDS47724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47724.1 Public Homo sapiens 7 CLEC2L 24 110 108 CCDS HistoryNCBI Gene:154790Re-query CCDS DB by CCDS ID:47724.1Re-query CCDS DB by GeneID:154790See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47724.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422142.7 ENSP00000390661.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422142.7Link to Ensembl Protein Viewer:ENSP00000390661.2Re-query CCDS DB by Nucleotide ID:ENST00000422142Re-query CCDS DB by Protein ID:ENSP00000390661
Original member Current member NCBI NM_001080511.4 NP_001073980.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080511.4Link to Protein Sequence:NP_001073980.2Re-query CCDS DB by Nucleotide ID:NM_001080511Re-query CCDS DB by Protein ID:NP_001073980Link to BLAST:NP_001073980.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073980.2 214 P0C7M8 214 100% 0 0

Chromosomal Locations for CCDS 47724.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139523928 139524117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139536274 139536348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139540321 139540487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139542021 139542121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139544231 139544342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGAGCCGGCCCGGGAGCCCCCCTCGCGGGCCCGGCCGCCGCCGCCCCTCGCCGCGCGCCCCGCGCCCG
CCCCCGCCGCCCCCAGGCCGCGTTCGCCCGCAGAGGCTGAGGCCCGCGGCCCCGAGGGGCTGCTGCGGCG
ATCCGGGTCGGGCTACGAGGGCAGCACCAGCTGGAAGGCGGCCTTGGAGGACACCACCACACGCCTCCTG
CTGGGTGCCATCGCGGTCCTTCTGTTCGCCATCTTGGTGGTGATGAGCATCTTGGCTTCCAAGGGCTGCA
TCAAGTGCGAAGCGCCCTGCCCGGAGGACTGGCTGCTCTACGGAAGGAAGTGCTACTTCTTTTCCGAGGA
ACCCAGAGACTGGAACACAGGCAGGCAGTACTGCCACACCCACGAGGCGGTGCTGGCTGTGATTCAGAGC
CAGAAGGAGCTGGAATTTATGTTCAAGTTCACGCGGAGGGAGCCCTGGATTGGACTACGCAGAGTTGGGG
ACGAATTCCACTGGGTCAACGGGGACCCGTTTGATCCGGACACGTTCACCATCGCAGGTCCAGGGGAGTG
TGTCTTCGTGGAGCCCACCAGGCTGGTGTCGACGGAGTGTCTGATGACCCGGCCCTGGGTGTGCAGCAAG
ATGGCCTATACTTGA

Translation (214 aa):
MEPAREPPSRARPPPPLAARPAPAPAAPRPRSPAEAEARGPEGLLRRSGSGYEGSTSWKAALEDTTTRLL
LGAIAVLLFAILVVMSILASKGCIKCEAPCPEDWLLYGRKCYFFSEEPRDWNTGRQYCHTHEAVLAVIQS
QKELEFMFKFTRREPWIGLRRVGDEFHWVNGDPFDPDTFTIAGPGECVFVEPTRLVSTECLMTRPWVCSK
MAYT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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