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Report for CCDS47736.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47736.2 Public Homo sapiens 7 NOBOX 24 110 108 CCDS HistoryNCBI Gene:135935Re-query CCDS DB by CCDS ID:47736.2Re-query CCDS DB by GeneID:135935See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47736.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000467773.1 ENSP00000419457.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000467773.1Link to Ensembl Protein Viewer:ENSP00000419457.1Re-query CCDS DB by Nucleotide ID:ENST00000467773Re-query CCDS DB by Protein ID:ENSP00000419457
Original member Current member NCBI NM_001080413.3 NP_001073882.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080413.3Link to Protein Sequence:NP_001073882.3Re-query CCDS DB by Nucleotide ID:NM_001080413Re-query CCDS DB by Protein ID:NP_001073882Link to BLAST:NP_001073882.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073882.3 691 O60393-1 691 100% 0 0

Chromosomal Locations for CCDS 47736.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144397240 144397541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144398282 144398586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144398950 144399178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144399397 144399482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144399757 144399863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144400110 144400312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144401046 144401597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144401869 144401950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144404556 144404680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144410143 144410227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGGCTCTCCTTTTGACACTAACATCACCAGACCTGGAGGGTACCTGGGACACCAGAGACAAGGATGGCT
TCAAAGCCCAGGAGGGGCCGCCCCTGGCTGTACCTGAATTTCCTGTGTGTGGACTGTACCGGATCTACGG
AGTCTGTGGCTCTTTCAGCTCCTTCTTCATCATCCGGTGCAGCCTTTGTGCTCTGGAGACCCTCAAATCA
CCCCAACATGATCCCTTAGAGATACCTGAACAGTCCCTCAAACTCATACCCCTGGTGTCTGGGAAAAGGG
AACTCACAAGGGGCCAGAAAGCTGGAGAGAAGCCCCTGGCTGCAGGACCCGGGGAGGAGGAACTGCTCCG
GGGCTCAGCCCCTCATGCTCAGGACACTCAGAGTGAGGAACTGCCACCCTCCTGCACCATCTCAGGAGAG
AAGAAGCCGCCAGCAGTCTCTGGAGAAGCCACCGGGGCTGATGCTGGGAGACTGTGCCCGCCCCCCCGCT
CCAGGGCTCCCCACAAAGACAGAACTCTAGCCCGCTCCAGGCCCCAGACTCAGGGGGAAGATTGTTCCCT
CCCAGTGGGAGAGGTGAAGATAGGAAAGAGGTCCTATTCTCCAGCCCCCGGGAAGCAGAAAAAGCCTAAT
GCCATGGGTCTGGCCCCAACATCATCTCCGGGTGCCCCTAACTCAGCCCGTGCCACACACAACCCAGTGC
CCTGTGGGTCAGGCCGGGGGCCCTGCCACCTGGCCAATCTCCTCAGTACATTGGCGCAGAGCAACCAAAA
CAGAGACCACAAGCAGGGGCCCCCGGAAGTGACCTGCCAAATTAGGAAAAAGACACGAACCCTATACCGC
TCAGATCAGCTGGAGGAGCTAGAGAAGATATTCCAAGAAGACCACTATCCTGACAGTGATAAACGCCGAG
AGATTGCCCAGACGGTGGGGGTGACCCCCCAGCGCATCATGGTAAAGGGGGCCGGCTCACTGGTGGCAGG
GTGGAGTGGCGGAGGGCCCACCATTGAAACACTCGAATTGCAGAGTGAGCGCTCAGCGGTAGCCTGGGTG
TGGTTCCAGAATCGCCGGGCCAAGTGGCGAAAAATGGAGAAACTGAATGGGAAAGAAAGCAAGGACAATC
CTGCAGCCCCTGGCCCTGCCAGCAGTCAATGCAGCTCTGCAGCTGAGATCCTACCTGCTGTGCCCATGGA
GCCAAAGCCTGACCCTTTCCCTCAGGAGTCCCCTCTGGATACCTTTCCAGAGCCCCCCATGCTGCTGACT
TCTGACCAGACTTTGGCCCCCACCCAACCCAGTGAGGGTGCTCAGAGGGTGGTGACCCCCCCACTCTTCA
GCCCCCCACCTGTGCGAAGGGCCGATCTTCCTTTCCCCCTTGGCCCTGTCCACACCCCCCAACTGATGCC
ACTGCTGATGGATGTTGCTGGCAGTGACAGCAGCCACAAGGACGGCCCCTGTGGGTCCTGGGGGACAAGC
ATCACCCTGCCACCCCCCTGTTCATATTTGGAGGAGCTGGAGCCCCAGGATTACCAACAGAGCAACCAGC
CAGGACCCTTCCAGTTCTCCCAGGCTCCACAGCCCCCGCTTTTCCAGTCCCCTCAGCCCAAGTTGCCCTA
CCTCCCCACTTTCCCCTTCTCCATGCCCAGTTCACTGACGCTTCCACCGCCCGAAGACTCTCTCTTTATG
TTTCCCTGTGGCCCCAGCGGGGGCACATCGCAGGGCTATTGCCCAGGTGCCTCCTCAGGACAGATCCTGA
TGCAACCACCTGCTGGGAATATAGGTACAGCCTCCTGGAGTGACCCCTGTTTGCCAGAGCTGCCCTTCCC
TGGTCCGTTCTGCCCACAAGCTCTGGGGCATCCCCCAGGAGGGGATGGCTACTTTCCTGATCTATTTCCA
ACTCCCTGCCCCCAGGCTCTGGGCAGGCAGCCTTCGTCAGCTCTCTCATGGATGCCTGAAGGGGCCAGAC
CAGGGACTGGGCCCTTACTCAGCAAGGCAAAAGAGGAACCACCAGCTGCTTCCCTGGATCAGCCCTCAGC
ACTGGAGGAGGCCAGAGGGGATGACAAGAATAGCCATGTCCCCTAG

Translation (691 aa):
MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRCSLCALETLKS
PQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSAPHAQDTQSEELPPSCTISGE
KKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQTQGEDCSLPVGEVKIGKRSYSPAPGKQKKPN
AMGLAPTSSPGAPNSARATHNPVPCGSGRGPCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYR
SDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWV
WFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT
SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHKDGPCGSWGTS
ITLPPPCSYLEELEPQDYQQSNQPGPFQFSQAPQPPLFQSPQPKLPYLPTFPFSMPSSLTLPPPEDSLFM
FPCGPSGGTSQGYCPGASSGQILMQPPAGNIGTASWSDPCLPELPFPGPFCPQALGHPPGGDGYFPDLFP
TPCPQALGRQPSSALSWMPEGARPGTGPLLSKAKEEPPAASLDQPSALEEARGDDKNSHVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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