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Report for CCDS47816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47816.1 Public Homo sapiens 8 GFRA2 24 110 108 CCDS HistoryNCBI Gene:2675Re-query CCDS DB by CCDS ID:47816.1Re-query CCDS DB by GeneID:2675See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524240.6 ENSP00000428518.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000524240.6Link to Ensembl Protein Viewer:ENSP00000428518.1Re-query CCDS DB by Nucleotide ID:ENST00000524240Re-query CCDS DB by Protein ID:ENSP00000428518
Original member Current member EBI ENST00000517328.5 ENSP00000429445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517328.5Link to Ensembl Protein Viewer:ENSP00000429445.1Re-query CCDS DB by Nucleotide ID:ENST00000517328Re-query CCDS DB by Protein ID:ENSP00000429445
Original member Current member NCBI NM_001495.5 NP_001486.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001495.5Link to Protein Sequence:NP_001486.4Re-query CCDS DB by Nucleotide ID:NM_001495Re-query CCDS DB by Protein ID:NP_001486Link to BLAST:NP_001486.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001486.4 464 O00451-1 464 100% 0 0

Chromosomal Locations for CCDS 47816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21693278 21693400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21694464 21694517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21702805 21702977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21704985 21705125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21705932 21706041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21750588 21750942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21774972 21775055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21782585 21782899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21788120 21788159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGATCTTGGCAAACGTCTTCTGCCTCTTCTTCTTTCTAGACGAGACCCTCCGCTCTTTGGCCAGCCCTT
CCTCCCTGCAGGGCCCCGAGCTCCACGGCTGGCGCCCCCCAGTGGACTGTGTCCGGGCCAATGAGCTGTG
TGCCGCCGAATCCAACTGCAGCTCTCGCTACCGCACTCTGCGGCAGTGCCTGGCAGGCCGCGACCGCAAC
ACCATGCTGGCCAACAAGGAGTGCCAGGCGGCCTTGGAGGTCTTGCAGGAGAGCCCGCTGTACGACTGCC
GCTGCAAGCGGGGCATGAAGAAGGAGCTGCAGTGTCTGCAGATCTACTGGAGCATCCACCTGGGGCTGAC
CGAGGGTGAGGAGTTCTACGAAGCCTCCCCCTATGAGCCGGTGACCTCCCGCCTCTCGGACATCTTCAGG
CTTGCTTCAATCTTCTCAGGGACAGGGGCAGACCCGGTGGTCAGCGCCAAGAGCAACCATTGCCTGGATG
CTGCCAAGGCCTGCAACCTGAATGACAACTGCAAGAAGCTGCGCTCCTCCTACATCTCCATCTGCAACCG
CGAGATCTCGCCCACCGAGCGCTGCAACCGCCGCAAGTGCCACAAGGCCCTGCGCCAGTTCTTCGACCGG
GTGCCCAGCGAGTACACCTACCGCATGCTCTTCTGCTCCTGCCAAGACCAGGCGTGCGCTGAGCGCCGCC
GGCAAACCATCCTGCCCAGCTGCTCCTATGAGGACAAGGAGAAGCCCAACTGCCTGGACCTGCGTGGCGT
GTGCCGGACTGACCACCTGTGTCGGTCCCGGCTGGCCGACTTCCATGCCAATTGTCGAGCCTCCTACCAG
ACGGTCACCAGCTGCCCTGCGGACAATTACCAGGCGTGTCTGGGCTCTTATGCTGGCATGATTGGGTTTG
ACATGACACCTAACTATGTGGACTCCAGCCCCACTGGCATCGTGGTGTCCCCCTGGTGCAGCTGTCGTGG
CAGCGGGAACATGGAGGAGGAGTGTGAGAAGTTCCTCAGGGACTTCACCGAGAACCCATGCCTCCGGAAC
GCCATCCAGGCCTTTGGCAACGGCACGGACGTGAACGTGTCCCCAAAAGGCCCCTCGTTCCAGGCCACCC
AGGCCCCTCGGGTGGAGAAGACGCCTTCTTTGCCAGATGACCTCAGTGACAGTACCAGCTTGGGGACCAG
TGTCATCACCACCTGCACGTCTGTCCAGGAGCAGGGGCTGAAGGCCAACAACTCCAAAGAGTTAAGCATG
TGCTTCACAGAGCTCACGACAAATATCATCCCAGGGAGTAACAAGGTGATCAAACCTAACTCAGGCCCCA
GCAGAGCCAGACCGTCGGCTGCCTTGACCGTGCTGTCTGTCCTGATGCTGAAACTGGCCTTGTAG

Translation (464 aa):
MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTLRQCLAGRDRN
TMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGEEFYEASPYEPVTSRLSDIFR
LASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDR
VPSEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQ
TVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRN
AIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSM
CFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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