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Report for CCDS4785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4785.1 Public Homo sapiens 6 LEMD2 24 110 108 CCDS HistoryNCBI Gene:221496Re-query CCDS DB by CCDS ID:4785.1Re-query CCDS DB by GeneID:221496See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4785.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293760.10 ENSP00000293760.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293760.10Link to Ensembl Protein Viewer:ENSP00000293760.5Re-query CCDS DB by Nucleotide ID:ENST00000293760Re-query CCDS DB by Protein ID:ENSP00000293760
Original member Current member EBI ENST00000614475.4 ENSP00000478539.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614475.4Link to Ensembl Protein Viewer:ENSP00000478539.1Re-query CCDS DB by Nucleotide ID:ENST00000614475Re-query CCDS DB by Protein ID:ENSP00000478539
Original member Current member NCBI NM_181336.4 NP_851853.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181336.4Link to Protein Sequence:NP_851853.1Re-query CCDS DB by Nucleotide ID:NM_181336Re-query CCDS DB by Protein ID:NP_851853Link to BLAST:NP_851853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851853.1 503 Q8NC56-1 503 100% 0 0

Chromosomal Locations for CCDS 4785.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33772628 33772778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33776954 33777056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33777138 33777239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33778242 33778387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33780100 33780179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33781077 33781153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33784352 33784427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33786734 33786774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33788381 33789116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGCCGGCCTGTCGGACCTGGAACTGCGGCGGGAGCTGCAGGCCCTGGGCTTCCAGCCAGGACCCATCA
CCGACACCACCCGGGATGTCTACCGCAACAAGCTGCGCCGCCTGCGGGGCGAGGCCCGGCTGCGCGACGA
GGAGCGGCTGCGGGAGGAGGCCCGGCCGCGGGGCGAGGAGCGGTTACGGGAAGAGGCCCGGTTACGCGAG
GATGCGCCGCTGCGCGCCCGGCCCGCCGCGGCCTCTCCGCGGGCGGAGCCCTGGCTCTCCCAGCCGGCCT
CGGGCTCGGCCTACGCGACCCCTGGGGCCTACGGTGATATCCGGCCCTCCGCGGCTTCCTGGGTAGGGAG
CCGCGGCCTCGCCTATCCTGCCCGCCCGGCGCAACTCAGGCGCCGCGCCTCGGTCCGGGGCAGCTCCGAG
GAGGACGAGGACGCCCGGACGCCCGACAGGGCCACGCAGGGCCCGGGTCTCGCGGCCCGCCGCTGGTGGG
CAGCGTCTCCCGCCCCGGCGCGGCTGCCTTCCTCCCTCCTCGGTCCCGACCCGCGCCCGGGCCTGCGGGC
GACTCGAGCGGGCCCTGCTGGCGCGGCGAGGGCCCGGCCTGAGGTGGGGCGCCGGCTGGAGCGCTGGCTC
TCTCGGCTTCTGCTCTGGGCCAGCCTAGGGCTACTGCTCGTCTTCCTGGGCATCCTTTGGGTGAAGATGG
GCAAGCCCTCAGCGCCGCAGGAGGCGGAGGACAACATGAAGTTATTGCCAGTGGACTGTGAGAGAAAAAC
AGATGAGTTCTGTCAGGCCAAGCAGAAGGCAGCCTTGCTGGAGCTGCTGCATGAACTCTACAATTTCCTG
GCCATCCAAGCTGGTAATTTTGAGTGTGGAAATCCAGAGAATCTAAAAAGCAAATGCATTCCTGTTATGG
AAGCCCAAGAATATATAGCCAATGTGACCAGCAGCTCCTCCGCCAAGTTTGAAGCCGCACTGACCTGGAT
ACTGAGCAGTAACAAGGACGTGGGCATCTGGTTGAAAGGAGAAGACCAGTCTGAATTGGTGACGACTGTG
GACAAGGTGGTCTGCCTGGAATCTGCCCACCCCCGCATGGGTGTTGGCTGCCGCCTGAGCCGGGCCTTGC
TCACTGCTGTCACCAACGTGCTCATCTTCTTCTGGTGCTTGGCTTTTTTGTGGGGGCTCCTAATTCTCCT
AAAATATCGGTGGCGAAAGTTAGAAGAGGAGGAACAAGCCATGTATGAGATGGTGAAGAAGATTATAGAC
GTGGTCCAGGACCATTACGTGGACTGGGAGCAGGACATGGAGCGCTATCCATATGTAGGCATCCTGCACG
TGCGCGACAGCTTGATCCCTCCACAGAGCCGGAGGCGCATGAAGCGTGTCTGGGACCGAGCTGTGGAGTT
CCTGGCCTCCAACGAATCCCGGATCCAGACGGAGTCCCACCGCGTTGCAGGAGAGGACATGCTGGTGTGG
AGATGGACTAAGCCCTCTTCCTTCTCTGACTCAGAGCGATAA

Translation (503 aa):
MAGLSDLELRRELQALGFQPGPITDTTRDVYRNKLRRLRGEARLRDEERLREEARPRGEERLREEARLRE
DAPLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPARPAQLRRRASVRGSSE
EDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATRAGPAGAARARPEVGRRLERWL
SRLLLWASLGLLLVFLGILWVKMGKPSAPQEAEDNMKLLPVDCERKTDEFCQAKQKAALLELLHELYNFL
AIQAGNFECGNPENLKSKCIPVMEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTV
DKVVCLESAHPRMGVGCRLSRALLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIID
VVQDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRVAGEDMLVW
RWTKPSSFSDSER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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