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Report for CCDS47894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47894.1 Public Homo sapiens 8 VIRMA 24 110 108 CCDS HistoryNCBI Gene:25962Re-query CCDS DB by CCDS ID:47894.1Re-query CCDS DB by GeneID:25962See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421249.2 ENSP00000398390.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421249.2Link to Ensembl Protein Viewer:ENSP00000398390.2Re-query CCDS DB by Nucleotide ID:ENST00000421249Re-query CCDS DB by Protein ID:ENSP00000398390
Original member Current member NCBI NM_183009.3 NP_892121.1 Accepted alive Link to Nucleotide Sequence:NM_183009.3Link to Protein Sequence:NP_892121.1Re-query CCDS DB by Nucleotide ID:NM_183009Re-query CCDS DB by Protein ID:NP_892121Link to BLAST:NP_892121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_892121.1 1147 Q69YN4-4 1147 100% 0 0

Chromosomal Locations for CCDS 47894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94511131 94511729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94511996 94512089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94514869 94514951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94517788 94517942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94518985 94519476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94526223 94527363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94529070 94529342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94530963 94531085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94534839 94535007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94537103 94537151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94538260 94538346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94543827 94543942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94553385 94553447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3444 nt):
ATGGCGGTGGACTCGGCGATGGAGCTGTTATTTTTAGATACTTTTAAACACCCGAGCGCTGAGCAAAGTT
CTCATATAGATGTGGTTCGTTTTCCATGTGTGGTTTATATCAATGAAGTCCGAGTCATACCCCCAGGAGT
AAGAGCCCATAGCAGTCTGCCAGACAATAGAGCATATGGAGAGACATCTCCCCATACATTTCAATTAGAC
TTATTCTTCAACAATGTAAGCAAACCAAGTGCCCCTGTTTTCGATAGGTTGGGAAGCCTGGAATATGATG
AGAATACTTCCATCATCTTTAGACCTAACTCAAAGGTGAATACTGATGGTCTGGTGCTAAGAGGCTGGTA
TAACTGTCTGACACTGGCAATATATGGATCAGTGGATAGAGTGATAAGTCATGACAGAGACTCTCCACCA
CCACCACCTCCACCGCCACCACCTCCCCAGCCACAACCAAGTTTGAAAAGGAATCCAAAACATGCTGATG
GGGAGAAAGAAGATCAGTTTAATGGAAGCCCTCCAAGACCACAGCCAAGGGGACCAAGAACTCCTCCAGG
ACCCCCTCCACCTGATGATGATGAAGATGATCCTGTGCCTCTGCCAGTGTCTGGTGACAAGGAAGAGGAT
GCTCCTCATAGAGAAGATTACTTTGAGCCCATTTCTCCTGATCGGAATTCTGTTCCCCAGGAAGGGCAAT
ATTCTGATGAAGGAGAAGTAGAAGAGGAACAACAAGAAGAAGGAGAAGAAGATGAAGATGATGTGGATGT
AGAGGAAGAAGAGGATGAGGATGAGGATGATCGACGAACAGTAGACAGTATTCCTGAGGAGGAAGAGGAA
GATGAAGAGGAAGAAGGTGAAGAGGATGAAGAAGGTGAAGGGGATGATGGTTATGAACAAATTTCCAGTG
ATGAAGATGGAATTGCTGACTTGGAACGTGAAACATTTAAGTATCCAAACTTTGATGTTGAATACACTGC
TGAAGACTTAGCTTCAGTTCCTCCTATGACATATGATCCATATGACAGGGAGCTTGTACCACTCTTATAC
TTCAGTTGTCCATACAAGACTACTTTTGAAATTGAAATCAGTAGAATGAAGGATCAAGGTCCAGATAAAG
AAAATTCAGGGGCAATCGAAGCCTCAGTGAAGTTAACAGAACTCTTAGATTTGTATAGAGAAGATAGAGG
TGCAAAATGGGTAACAGCTTTAGAAGAAATTCCAAGTTTAATAATAAAAGGGTTAAGCTATTTGCAATTG
AAAAACACAAAACAAGACTCCCTTGGCCAGTTGGTAGACTGGACCATGCAAGCTTTAAATTTACAAGTAG
CGCTTCGCCAACCTATCGCCTTAAATGTTCGACAGCTCAAAGCTGGGACCAAATTAGTGTCCTCACTAGC
AGAATGTGGGGCTCAAGGAGTTACAGGACTGCTACAAGCAGGAGTGATCAGTGGATTATTTGAACTTCTG
TTTGCTGATCACGTATCATCTTCTCTTAAGTTAAATGCTTTTAAAGCTTTGGACAGTGTCATTAGTATGA
CAGAAGGAATGGAAGCTTTTTTAAGAGGTAGGCAGAATGAAAAAAGTGGTTATCAAAAGCTTCTGGAACT
CATACTTTTAGATCAGACTGTGAGGGTTGTTACTGCTGGTTCAGCTATTCTCCAAAAATGCCATTTCTAT
GAAGTCTTGTCAGAGATTAAAAGACTTGGTGACCATTTAGCAGAGAAGACTTCATCTCTTCCTAACCACA
GTGAACCTGATCACGACACAGATGCTGGACTTGAGAGAACAAACCCAGAATATGAAAATGAGGTGGAAGC
TTCTATGGATATGGATCTTTTGGAATCCTCAAATATAAGTGAAGGGGAAATAGAAAGGCTTATTAACCTC
CTAGAAGAAGTTTTTCATTTAATGGAAACTGCCCCTCATACAATGATCCAACAACCTGTTAAGTCTTTCC
CAACGATGGCACGAATTACTGGACCTCCAGAGAGGGATGATCCATACCCTGTTCTCTTTAGATATCTTCA
CAGTCATCACTTCTTGGAGTTGGTTACCTTGCTTCTGTCAATTCCAGTAACAAGTGCTCACCCTGGTGTG
CTGCAAGCCACAAAAGATGTTTTGAAGTTTCTTGCACAGTCACAGAAGGGTCTTCTTTTTTTTATGTCGG
AATATGAAGCAACAAATTTATTGATCCGAGCTCTGTGTCACTTTTATGATCAAGATGAGGAGGAAGGTCT
CCAATCTGATGGTGTTATTGATGATGCATTTGCCTTGTGGCTACAGGACTCAACACAGACATTGCAATGT
ATTACAGAACTGTTCAGCCATTTTCAGCGTTGTACAGCCAGTGAAGAAACAGACCATTCAGATCTCTTGG
GAACCCTGCACAATCTTTATTTGATTACTTTTAATCCTGTGGGAAGATCAGCTGTTGGCCATGTTTTTAG
TCTGGAGAAAAATCTCCAAAGTCTTATTACTCTAATGGAGTACTATTCCAAAGAAGCCTTGGGTGATTCC
AAATCTAAGAAGTCAGTAGCTTATAATTACGCATGCATACTTATTTTGGTGGTGGTTCAGTCTTCCAGTG
ATGTTCAAATGCTAGAACAACATGCAGCATCTCTCTTGAAGCTTTGTAAAGCAGATGAAAATAATGCTAA
ATTGCAAGAACTTGGCAAGTGGCTTGAACCTCTGAAAAACCTTAGATTTGAAATTAACTGCATCCCAAAC
TTAATTGAGTATGTTAAGCAGAATATCGATAACTTGATGACCCCAGAAGGAGTTGGCCTTACCACTGCCT
TACGTGTTCTCTGTAATGTTGCATGCCCACCACCTCCTGTTGAAGGTCAACAGAAAGATCTGAAATGGAA
TCTTGCCGTTATTCAGCTTTTTTCTGCTGAAGGAATGGACACGTTTATTCGAGTTCTGCAAAAATTGAAC
AGTATTCTGACTCAGCCTTGGAGGCTCCATGTCAACATGGGGACTACCCTTCACAGAGTTACTACTATTT
CAATGGCTCGCTGCACACTCACTCTTCTTAAAACTATGTTAACGGAACTCCTGAGAGGTGGATCCTTTGA
GTTTAAGGACATGCGTGTTCCTTCAGCGCTTGTTACTTTACATATGCTCCTGTGCTCTATCCCCCTCTCA
GGTCGTTTGGATAGTGATGAACAGAAAATTCAGAATGATATCATTGATATTTTACTGACTTTTACACAAG
GAGTTAATGAAAAACTCACAATCTCAGAAGAGACTCTGGCCAATAATACTTGGTCTTTAATGTTAAAAGA
AGTTCTTTCTTCAATCTTGAAGGTTCCTGAAGGATTTTTTTCTGGACTCATACTCCTTTCAGAGCTGCTG
CCTCTTCCATTGCCCATGCAAACAACTCAGGTATCACTTCCATATAACATGCATCTTATAAATGACTGCA
GTAACACTTTTTAA

Translation (1147 aa):
MAVDSAMELLFLDTFKHPSAEQSSHIDVVRFPCVVYINEVRVIPPGVRAHSSLPDNRAYGETSPHTFQLD
LFFNNVSKPSAPVFDRLGSLEYDENTSIIFRPNSKVNTDGLVLRGWYNCLTLAIYGSVDRVISHDRDSPP
PPPPPPPPPQPQPSLKRNPKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDDDEDDPVPLPVSGDKEED
APHREDYFEPISPDRNSVPQEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDEDEDDRRTVDSIPEEEEE
DEEEEGEEDEEGEGDDGYEQISSDEDGIADLERETFKYPNFDVEYTAEDLASVPPMTYDPYDRELVPLLY
FSCPYKTTFEIEISRMKDQGPDKENSGAIEASVKLTELLDLYREDRGAKWVTALEEIPSLIIKGLSYLQL
KNTKQDSLGQLVDWTMQALNLQVALRQPIALNVRQLKAGTKLVSSLAECGAQGVTGLLQAGVISGLFELL
FADHVSSSLKLNAFKALDSVISMTEGMEAFLRGRQNEKSGYQKLLELILLDQTVRVVTAGSAILQKCHFY
EVLSEIKRLGDHLAEKTSSLPNHSEPDHDTDAGLERTNPEYENEVEASMDMDLLESSNISEGEIERLINL
LEEVFHLMETAPHTMIQQPVKSFPTMARITGPPERDDPYPVLFRYLHSHHFLELVTLLLSIPVTSAHPGV
LQATKDVLKFLAQSQKGLLFFMSEYEATNLLIRALCHFYDQDEEEGLQSDGVIDDAFALWLQDSTQTLQC
ITELFSHFQRCTASEETDHSDLLGTLHNLYLITFNPVGRSAVGHVFSLEKNLQSLITLMEYYSKEALGDS
KSKKSVAYNYACILILVVVQSSSDVQMLEQHAASLLKLCKADENNAKLQELGKWLEPLKNLRFEINCIPN
LIEYVKQNIDNLMTPEGVGLTTALRVLCNVACPPPPVEGQQKDLKWNLAVIQLFSAEGMDTFIRVLQKLN
SILTQPWRLHVNMGTTLHRVTTISMARCTLTLLKTMLTELLRGGSFEFKDMRVPSALVTLHMLLCSIPLS
GRLDSDEQKIQNDIIDILLTFTQGVNEKLTISEETLANNTWSLMLKEVLSSILKVPEGFFSGLILLSELL
PLPLPMQTTQVSLPYNMHLINDCSNTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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