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Report for CCDS47942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47942.1 Public Homo sapiens 8 FBXL6 24 110 108 CCDS HistoryNCBI Gene:26233Re-query CCDS DB by CCDS ID:47942.1Re-query CCDS DB by GeneID:26233See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455319.6 ENSP00000403873.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455319.6Link to Ensembl Protein Viewer:ENSP00000403873.2Re-query CCDS DB by Nucleotide ID:ENST00000455319Re-query CCDS DB by Protein ID:ENSP00000403873
Original member Current member NCBI NM_024555.6 NP_078831.4 Accepted alive Link to Nucleotide Sequence:NM_024555.6Link to Protein Sequence:NP_078831.4Re-query CCDS DB by Nucleotide ID:NM_024555Re-query CCDS DB by Protein ID:NP_078831Link to BLAST:NP_078831.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078831.4 533 Q8N531-2 533 100% 0 0

Chromosomal Locations for CCDS 47942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144355531 144355678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144355968 144356214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356300 144356531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356600 144356713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356808 144356915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356990 144357121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144357457 144357502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144357628 144357786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144358032 144358447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCTGCCCCAGCCTCCCGGCAGGTCCGACGCAGAGCCCGGGCAGCGCCGCGGCCCCGCTCGGCCGAGG
ACTGGTGGTGGGACCGGCTGGCGCCGAGGGGCTCGGGGTACCACCTGCTGCAGTCCGACAGCATGCTGCT
GGTGCTGTCCGAACCCGGCCCCGCCCGGCCCCGCGCACAGCGGCGCGCTTCCCGCCGCACTCCCCGGCAG
CCGCCCCGGGGCCCCAGCGCCGCGGCCAAGCCCAAGGCCGGGCTCAGGTCCGAGGCGGCGGCCGCGCCCG
CACCCGCACCGGCACCCACGCCCACGCCCGAGGAAGGGCCCGACGCGGGCTGGGGAGACCGCATTCCCTT
GGAAATCCTGGTGCAGATTTTCGGGTTGTTGGTGGCGGCGGACGGCCCCATGCCCTTCCTGGGCAGGGCT
GCGCGCGTGTGCCGCCGCTGGCAGGAGGCCGCTTCCCAACCCGCGCTCTGGCACACCGTGACCCTGTCGT
CCCCGCTGGTCGGCCGGCCTGCCAAGGGCGGGGTCAAGGCGGAGAAGAAGCTCCTTGCTTCCCTGGAGTG
GCTTATGCCCAATCGGTTTTCACAGCTCCAGAGGCTGACCCTCATCCACTGGAAGTCTCAGCTGGTAGGT
GAGTGCTGTCCTCGGCTCACTTTCCTCAAGCTCTCCGGCTGCCACGGTGTGACTGCTGACGCTCTGGTCA
TGCTAGCCAAAGCCTGCTGCCAGCTCCATAGCCTGGACCTACAGCACTCCATGGTGGAGTCCACAGCTGT
GGTGAGCTTCTTGGAGGAGGCAGGGTCCCGAATGCGCAAGTTGTGGCTGACCTACAGCTCCCAGACGACA
GCCATCCTGGGCGCACTGCTGGGCAGCTGCTGCCCCCAGCTCCAGGTCCTGGAGGTGAGCACCGGCATCA
ACCGTAATAGCATTCCCCTTCAGCTGCCTGTCGAGGCTCTGCAGAAAGGCTGCCCTCAGCTCCAGGTGCT
GCGGCTGTTGAACCTGATGTGGCTGCCCAAGCCTCCGGGACGAGGGGTGGCTCCCGGACCAGGCTTCCCT
AGCCTAGAGGAGCTCTGCCTGGCGAGCTCAACCTGCAACTTTGTGAGCAACGAGGTCCTGGGCCGCCTAC
TCCACGGCTCTCCCAACCTGCGCTTACTGGATCTTCGTGGCTGTGCGCGCATCACGCCGGCTGGCCTTCA
GGATCTGCCATGTCGGGAGCTGGAGCAGCTTCATCTGGGCCTGTATGGCACGTCAGACCGGCTGACTCTA
GCCAAGGAGGGCAGCCCCTTTTTGACCCAGAAGTGGTGCCATACACTGCGAGAACTGGACTTGAGTGGCC
AGGGGTTCAGTGAGAAGGACCTGGAGCAGGCCCTGGCTGCCTTCTTAAGCACCCCTGGGGGCTCACACCC
AGCCCTGTGCTCTCTTAACCTCAGGGGCACCCGGGTCACACCAAGCACTGTCAGCTCTGTGATCAGCGGC
TGCCCGGGCCTGCTCTACCTCAACCTGGAGTCCTGCCGCTGCCTTCCCCGGGGTCTGAAGCGGGCCTACC
GGGGCCTGGAGGAAGTCCAGTGGTGTCTGGAGCAGCTGCTCACCAGCCCCTCACCCAGCTAG

Translation (533 aa):
MAAPASRQVRRRARAAPRPRSAEDWWWDRLAPRGSGYHLLQSDSMLLVLSEPGPARPRAQRRASRRTPRQ
PPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEILVQIFGLLVAADGPMPFLGRA
ARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKKLLASLEWLMPNRFSQLQRLTLIHWKSQLVG
ECCPRLTFLKLSGCHGVTADALVMLAKACCQLHSLDLQHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTT
AILGALLGSCCPQLQVLEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFP
SLEELCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGTSDRLTL
AKEGSPFLTQKWCHTLRELDLSGQGFSEKDLEQALAAFLSTPGGSHPALCSLNLRGTRVTPSTVSSVISG
CPGLLYLNLESCRCLPRGLKRAYRGLEEVQWCLEQLLTSPSPS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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