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Report for CCDS47980.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47980.2 Public Homo sapiens 9 C9orf57 24 110 108 CCDS HistoryNCBI Gene:138240Re-query CCDS DB by CCDS ID:47980.2Re-query CCDS DB by GeneID:138240See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 47980.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651200.2 ENSP00000498279.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651200.2Link to Ensembl Protein Viewer:ENSP00000498279.1Re-query CCDS DB by Nucleotide ID:ENST00000651200Re-query CCDS DB by Protein ID:ENSP00000498279
Original member Current member EBI ENST00000652156.1 ENSP00000498526.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652156.1Link to Ensembl Protein Viewer:ENSP00000498526.1Re-query CCDS DB by Nucleotide ID:ENST00000652156Re-query CCDS DB by Protein ID:ENSP00000498526
Original member Current member NCBI NM_001128618.2 NP_001122090.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128618.2Link to Protein Sequence:NP_001122090.2Re-query CCDS DB by Nucleotide ID:NM_001128618Re-query CCDS DB by Protein ID:NP_001122090Link to BLAST:NP_001122090.2

Chromosomal Locations for CCDS 47980.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72052296 72052435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72056074 72056196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72056784 72056843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72059235 72059331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGAGAAGGATTGTTTTTGCTGGTGTTATCTTATTCCGCCTCTTAGGTGTTATCTTATTCCGCCTCTTAG
GTGTTATCTTATTCGGCCGCTTAGGTGACCTGGGAACCTGCCAGACAAAACCTGGTCAGTACTGGAAAGA
AGAGGTCCACATTCAAGATGTTGGAGGTTTGATTTGCAGAGCATGCAATCTTTCACTGCCCTTCCATGGA
TGTCTTTTAGACCTGGGAACCTGCCAGGCAGAACCTGGTCAGTACTGTAAAGAAGAGGTCCACATTCAAG
GTGGCATTCAATGGTATTCAGTCAAAGGCTGCACAAAGAACACATCAGAGTGCTTCAAGAGTACTCTCGT
CAAGAGAATTCTGCAACTGCATGAACTTGTAACTACTCACTGCTGCAATCATTCTTTGTGCAATTTCTGA

Translation (139 aa):
MRRIVFAGVILFRLLGVILFRLLGVILFGRLGDLGTCQTKPGQYWKEEVHIQDVGGLICRACNLSLPFHG
CLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFKSTLVKRILQLHELVTTHCCNHSLCNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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