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Report for CCDS48106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48106.1 Public Homo sapiens X MAGIX 24 110 108 CCDS HistoryNCBI Gene:79917Re-query CCDS DB by CCDS ID:48106.1Re-query CCDS DB by GeneID:79917See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595224.6 ENSP00000471299.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000595224.6Link to Ensembl Protein Viewer:ENSP00000471299.1Re-query CCDS DB by Nucleotide ID:ENST00000595224Re-query CCDS DB by Protein ID:ENSP00000471299
Original member Current member NCBI NM_024859.4 NP_079135.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024859.4Link to Protein Sequence:NP_079135.3Re-query CCDS DB by Nucleotide ID:NM_024859Re-query CCDS DB by Protein ID:NP_079135Link to BLAST:NP_079135.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079135.3 334 Q9H6Y5-1 334 100% 0 0

Chromosomal Locations for CCDS 48106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49162890 49162938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49163783 49163929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49164707 49164789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49164863 49165090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49165190 49165361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49166074 49166399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGAGCCGCGCACAGGGGACGCCGCGGACCCTAGGGGGAGCAGAGGAGGCCGCGGCCCCTCCCCGCTCG
CGGGCCCTAGCGCCCGGCAGCTCCTGGCGCGGTTGGACGCGCGCCCCCTGGCGGCGCGAGCTGCGGTCGA
CGTGGCAGCGCTGGTACGCAGGGCGGGCGCCACATTGCGCCTGCGCCGGAAGGAGGCTGTTAGCGTGCTG
GACTCTGCGGACATAGAGGTCACAGACAGTCGCCTGCCTCATGCCACTATTGTGGATCACCGGCCCCAGC
ACCGTTGGTTAGAGACATGTAACGCACCTCCCCAATTGATCCAGGGTAAGGCACGTAGTGCTCCGAAGCC
ATCCCAGGCCTCTGGTCATTTCTCTGTGGAGCTGGTTCGCGGTTACGCAGGCTTTGGCCTCACCTTAGGT
GGGGGCCGGGATGTAGCTGGGGACACTCCGCTGGCCGTGCGCGGGCTGCTGAAGGATGGCCCAGCACAGC
GCTGTGGTCGTTTGGAGGTCGGGGACCTCGTGCTCCACATCAACGGAGAGTCAACGCAGGGCCTCACCCA
TGCCCAGGCCGTGGAGCGGATCCGAGCTGGAGGCCCCCAGCTCCACCTGGTTATTCGTCGGCCTCTGGAG
ACCCACCCTGGCAAGCCTCGAGGGGTGGGAGAGCCCCGAAAAGGAGTTGTCCCGTCATGGCCAGATCGCA
GCCCAGATCCTGGAGGGCCGGAGGTAACGGGGTCTCGCAGCAGCAGCACTTCCCTAGTTCAGCACCCTCC
ATCCCGGACGACGCTCAAGAAGACCCGGGGCAGCCCGGAGCCTAGTCCAGAGGCGGCCGCCGATGGCCCC
ACGGTTTCTCCTCCTGAGCGCCGCGCTGAGGATCCCAACGACCAGATCCCGGGTTCCCCGGGGCCCTGGC
TAGTGCCCAGCGAGGAACGGCTCTCGCGGGCCCTAGGGGTCCGGGGGGCAGCGCAGCTCGCTCAGGAGAT
GGCAGCCGGAAGGCGGAGACACTGA

Translation (334 aa):
MEPRTGDAADPRGSRGGRGPSPLAGPSARQLLARLDARPLAARAAVDVAALVRRAGATLRLRRKEAVSVL
DSADIEVTDSRLPHATIVDHRPQHRWLETCNAPPQLIQGKARSAPKPSQASGHFSVELVRGYAGFGLTLG
GGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLE
THPGKPRGVGEPRKGVVPSWPDRSPDPGGPEVTGSRSSSTSLVQHPPSRTTLKKTRGSPEPSPEAAADGP
TVSPPERRAEDPNDQIPGSPGPWLVPSEERLSRALGVRGAAQLAQEMAAGRRRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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