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Report for CCDS48171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48171.1 Public Homo sapiens X CCDC160 24 110 108 CCDS HistoryNCBI Gene:347475Re-query CCDS DB by CCDS ID:48171.1Re-query CCDS DB by GeneID:347475See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370809.5 ENSP00000359845.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370809.5Link to Ensembl Protein Viewer:ENSP00000359845.4Re-query CCDS DB by Nucleotide ID:ENST00000370809Re-query CCDS DB by Protein ID:ENSP00000359845
Original member Current member EBI ENST00000517294.5 ENSP00000427951.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517294.5Link to Ensembl Protein Viewer:ENSP00000427951.1Re-query CCDS DB by Nucleotide ID:ENST00000517294Re-query CCDS DB by Protein ID:ENSP00000427951
Original member Current member EBI ENST00000695460.1 ENSP00000511932.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695460.1Link to Ensembl Protein Viewer:ENSP00000511932.1Re-query CCDS DB by Nucleotide ID:ENST00000695460Re-query CCDS DB by Protein ID:ENSP00000511932
Original member Current member NCBI NM_001101357.3 NP_001094827.1 Accepted alive Link to Nucleotide Sequence:NM_001101357.3Link to Protein Sequence:NP_001094827.1Re-query CCDS DB by Nucleotide ID:NM_001101357Re-query CCDS DB by Protein ID:NP_001094827Link to BLAST:NP_001094827.1
Original member Current member NCBI NM_001353453.3 NP_001340382.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353453.3Link to Protein Sequence:NP_001340382.1Re-query CCDS DB by Nucleotide ID:NM_001353453Re-query CCDS DB by Protein ID:NP_001340382Link to BLAST:NP_001340382.1
Original member Current member NCBI NM_001393996.1 NP_001380925.1 Accepted alive Link to Nucleotide Sequence:NM_001393996.1Link to Protein Sequence:NP_001380925.1Re-query CCDS DB by Nucleotide ID:NM_001393996Re-query CCDS DB by Protein ID:NP_001380925Link to BLAST:NP_001380925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094827.1 325 A6NGH7 325 100% 0 0
NP_001340382.1 325 A6NGH7 325 100% 0 0
NP_001380925.1 325 A6NGH7 325 100% 0 0

Chromosomal Locations for CCDS 48171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134244801 134245778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGATGCTAGAAGAAAACACTGGAAGGAGAATATGTTTACTCCTTTTTTTAGTGCACAAGATGTTCTAG
AAGAGACTTCTGAGCCTGAATCTTCTTCTGAACAAACGACTGCAGATAGCAGCAAGGGAATGGAAGAAAT
TTATAATTTGTCCAGTAGAAAGTTTCAGGAAGAAAGTAAATTTAAGAGGAAAAAATATATTTTCCAACTA
AATGAAATAGAACAAGAACAAAATTTAAGAGAGAACAAGAGAAACATTTCAAAGAATGAAACAGACACAA
ATTCTGCATCCTATGAATCATCTAATGTGGATGTTACAACAGAAGAAAGCTTTAACAGCACAGAAGATAA
CTCTACCTGCAGTACAGATAACTTACCAGCTCTACTAAGACAAGACATAAGAAAGAAATTTATGGAAAGA
ATGTCTCCAAAACTTTGCCTGAATCTTTTGAATGAAGAACTGGAAGAACTTAATATGAAATACAGAAAAA
TAGAAGAGGAATTTGAAAATGCTGAAAAAGAACTTTTGCACTACAAAAAAGAAATATTCACAAAACCCCT
AAATTTTCAAGAAACAGAGACGGATGCTTCAAAAAGTGACTATGAACTTCAAGCTTTAAGAAATGACCTG
TCTGAAAAAGCAACAAATGTAAAAAACTTAAGTGAACAGCTCCAGCAAGCCAAAGAAGTCATCCACAAAT
TGAACCTAGAGAACAGAAATTTAAAAGAAGCTGTTAGGAAGTTAAAGCATCAAACCGAGGTTGGAAATGT
GCTCCTAAAAGAAGAAATGAAATCATATTATGAATTAGAAATGGCAAAGATCCGCGGAGAGCTCAGTGTC
ATCAAGAATGAACTGAGAACTGAGAAGACCCTACAAGCAAGAAATAACAGAGCCTTGGAGTTGCTTAGAA
AATACTATGCTTCTTCAATGGTAACATCATCAAGTATCCTTGACCACTTTACTGGGGATTTTTTTTAA

Translation (325 aa):
MDARRKHWKENMFTPFFSAQDVLEETSEPESSSEQTTADSSKGMEEIYNLSSRKFQEESKFKRKKYIFQL
NEIEQEQNLRENKRNISKNETDTNSASYESSNVDVTTEESFNSTEDNSTCSTDNLPALLRQDIRKKFMER
MSPKLCLNLLNEELEELNMKYRKIEEEFENAEKELLHYKKEIFTKPLNFQETETDASKSDYELQALRNDL
SEKATNVKNLSEQLQQAKEVIHKLNLENRNLKEAVRKLKHQTEVGNVLLKEEMKSYYELEMAKIRGELSV
IKNELRTEKTLQARNNRALELLRKYYASSMVTSSSILDHFTGDFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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