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Report for CCDS48180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48180.1 Public Homo sapiens X MAGEA11 24 110 108 CCDS HistoryNCBI Gene:4110Re-query CCDS DB by CCDS ID:48180.1Re-query CCDS DB by GeneID:4110See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355220.6 ENSP00000347358.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355220.6Link to Ensembl Protein Viewer:ENSP00000347358.5Re-query CCDS DB by Nucleotide ID:ENST00000355220Re-query CCDS DB by Protein ID:ENSP00000347358
Original member Current member NCBI NM_005366.5 NP_005357.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005366.5Link to Protein Sequence:NP_005357.2Re-query CCDS DB by Nucleotide ID:NM_005366Re-query CCDS DB by Protein ID:NP_005357Link to BLAST:NP_005357.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005357.2 429 P43364-1 429 100% 0 0

Chromosomal Locations for CCDS 48180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 149713160 149713255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149714481 149714576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149715604 149715677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149715753 149716776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGAGACTCAGTTCCGCAGAGGGGGTCTGGGGTGCAGCCCTGCCAGCATCAAGAGGAAGAAGAAGAGGG
AGGACTCAGGAGACTTTGGACTCCAGGTGAGCACTATGTTCTCAGAGGACGACTTCCAGTCAACAGAAAG
AGCCCCATATGGTCCACAACTACAGTGGTCCCAGGATCTGCCAAGAGTCCAGGTTTTTAGAGAACAGGCC
AACCTGGAGGACAGGAGTCCCAGGAGAACCCAGAGGATCACTGGAGGAGAACAAGTGCTGTGGGGCCCCA
TCACCCAGATATTTCCCACAGTTCGGCCTGCTGACCTAACCAGAGTCATCATGCCTCTTGAGCAAAGAAG
TCAGCACTGCAAGCCTGAGGAAGGCCTTCAGGCCCAAGAAGAAGACCTGGGCCTGGTGGGTGCACAGGCT
CTCCAAGCTGAGGAGCAGGAGGCTGCCTTCTTCTCCTCTACTCTGAATGTGGGCACTCTAGAGGAGTTGC
CTGCTGCTGAGTCACCAAGTCCTCCCCAGAGTCCTCAGGAAGAGTCCTTCTCTCCCACTGCCATGGATGC
CATCTTTGGGAGCCTATCTGATGAGGGCTCTGGCAGCCAAGAAAAGGAGGGGCCAAGTACCTCGCCTGAC
CTGATAGACCCTGAGTCCTTTTCCCAAGATATACTACATGACAAGATAATTGATTTGGTTCATTTATTGC
TCCGCAAGTATCGAGTCAAGGGGCTGATCACAAAGGCAGAAATGCTGGGGAGTGTCATCAAAAATTATGA
GGACTACTTTCCTGAGATATTTAGGGAAGCCTCTGTATGCATGCAACTGCTCTTTGGCATTGATGTGAAG
GAAGTGGACCCCACTAGCCACTCCTATGTCCTTGTCACCTCCCTCAACCTCTCTTATGATGGCATACAGT
GTAATGAGCAGAGCATGCCCAAGTCTGGCCTCCTGATAATAGTCCTGGGTGTAATCTTCATGGAGGGGAA
CTGCATCCCTGAAGAGGTTATGTGGGAAGTCCTGAGCATTATGGGGGTGTATGCTGGAAGGGAGCACTTC
CTCTTTGGGGAGCCCAAGAGGCTCCTTACCCAAAATTGGGTGCAGGAAAAGTACCTGGTGTACCGGCAGG
TGCCCGGCACTGATCCTGCATGCTATGAGTTCCTGTGGGGTCCAAGGGCCCACGCTGAGACCAGCAAGAT
GAAAGTTCTTGAGTACATAGCCAATGCCAATGGGAGGGATCCCACTTCTTACCCATCCCTGTATGAAGAT
GCTTTGAGAGAGGAGGGAGAGGGAGTCTGA

Translation (429 aa):
METQFRRGGLGCSPASIKRKKKREDSGDFGLQVSTMFSEDDFQSTERAPYGPQLQWSQDLPRVQVFREQA
NLEDRSPRRTQRITGGEQVLWGPITQIFPTVRPADLTRVIMPLEQRSQHCKPEEGLQAQEEDLGLVGAQA
LQAEEQEAAFFSSTLNVGTLEELPAAESPSPPQSPQEESFSPTAMDAIFGSLSDEGSGSQEKEGPSTSPD
LIDPESFSQDILHDKIIDLVHLLLRKYRVKGLITKAEMLGSVIKNYEDYFPEIFREASVCMQLLFGIDVK
EVDPTSHSYVLVTSLNLSYDGIQCNEQSMPKSGLLIIVLGVIFMEGNCIPEEVMWEVLSIMGVYAGREHF
LFGEPKRLLTQNWVQEKYLVYRQVPGTDPACYEFLWGPRAHAETSKMKVLEYIANANGRDPTSYPSLYED
ALREEGEGV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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