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Report for CCDS48288.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48288.2 Public Mus musculus 1 Tns1 23 108 98 CCDS HistoryNCBI Gene:21961Re-query CCDS DB by CCDS ID:48288.2Re-query CCDS DB by GeneID:21961See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 48288.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data. This update has an inferred exon combination due to a lack of full-length transcript support for this gene; it is supported by alignments of partial mouse and orthologous transcripts.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48288.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191104.6 ENSMUSP00000140317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191104.6Link to Ensembl Protein Viewer:ENSMUSP00000140317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191104Re-query CCDS DB by Protein ID:ENSMUSP00000140317
Original member Current member NCBI NM_001289895.2 NP_001276824.1 Accepted alive Link to Nucleotide Sequence:NM_001289895.2Link to Protein Sequence:NP_001276824.1Re-query CCDS DB by Nucleotide ID:NM_001289895Re-query CCDS DB by Protein ID:NP_001276824Link to BLAST:NP_001276824.1

Chromosomal Locations for CCDS 48288.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 73914530 73914674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73916439 73916471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73916866 73916934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73917633 73917801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73917998 73918069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73919654 73919731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73920507 73920599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73920958 73921089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73921767 73921853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73924706 73925769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73927912 73928110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73937225 73937317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73940978 73941053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73941910 73942106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73952421 73953950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73980914 73981030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73982233 73982298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73985019 73985148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73985703 73985778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73985875 73985935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73986263 73986375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73990311 73990394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73991675 73991739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73992100 73992222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73993163 73993213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73995201 73995381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 73997049 73997104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74002287 74002337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74003517 74003558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74016145 74016186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74068609 74068646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74079199 74079313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74124292 74124447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5604 nt):
ATGGGCTGCACCGTGAGCCTGGTGTGCTGCGAGGCGCTCGAGCCTCTGCCCTCCTGCGGCCCGCAGCCCC
CCGGGACTCCGCCGGGCCCCGCGCGGCCCGAGCGCTGTGAGCCCGGGGGTGCGGCGCCCGACCCGAGGAG
GCGGCTGCTGCTTCAGCCAGAAGACCTGGAGGCCCCCAAGACCCACCACTTCAAGGTGAAGGCCTTCAAG
AAGGTGAAGCCCTGTGGCATCTGCCGGCAGGCCATCACTCGGGAAGGCTGTGTTTGCAAAGTCTGCAGCT
TCTCCTGTCATCGGAAATGCCAGGCCAAGGTGGCTGCCCCTTGCGTTCCTCCGTCCAGCCATGAACTGGT
GCCCATCACCACAGAGACCGTACCCAAGAATGTAGTAGATGTGGGGGAAGGAGACTGCCGGGTTGGAAGT
TCTCCGAAAAACCTGGAGGAGGGCGGCTCCATGAGAGTTTCTCCAAGCATACAGCCACAACCACAATCAC
AGCCTACCAGTCTCTCTAGAAACACGAGTGTGAGCCGAGCCATGGAAGACAGTTGTGAGCTGGACCTGGT
GTATGTCACCGAACGCATCATCGCCGTGTCCTTCCCTAGCACAGCCAATGAGGAGAACTTCCGCAGCAAC
CTCCGTGAAGTGGCTCAGATGTTGAAGTCCAAGCATGGGGGCAACTACCTGCTATTCAACCTCTCTGAAC
AGAGGCCTGACATCACCAAGCTGCATGCTAAGGTCCTGGAATTCGGCTGGCCTGACCTGCACACACCGGC
CCTGGAGAAGATATGCAGTGTCTGTAAGGCCATGGACACCTGGCTCAATGCAGACCCCCACAATGTCGTT
GTTCTCCACAACAAGGGAAACCGAGGCAGGATTGGGGTTGTCATTGCAGCGTATCTGCACTACAGCAACA
TTTCAGCCAGTGCTGACCAGGCTCTGGACCGGTTTGCAATGAAGAGATTCTATGAGGACAAGATCGTGCC
CATTGGCCAGCCATCCCAGAGGAGATATGTGCACTACTTCAGTGGCCTACTCTCTGGCTCCATCAAAATG
AACAACAAGCCTTTGTTTCTGCATCATGTGATCATGCACGGCATCCCCAACTTTGAGTCTAAAGGAGGGT
GCCGGCCCTTTCTCCGCATCTACCAAGCCATGCAACCTGTGTACACATCTGGCATTTACAACATCCCTGG
AGACAGCCAGGCCAGCATCTGTATCACCATTGAACCAGGGCTGCTCTTGAAGGGAGACATCTTGCTGAAG
TGTTATCATAAGAAATTCCGGAGCCCGGCTCGAGACGTCATCTTCCGAGTGCAGTTCCACACCTGTGCCA
TCCATGACTTGGGGGTTGTTTTTGGGAAGGAAGATCTGGATGAGGCCTTCAAAGATGATCGATTTCCTGA
CTATGGCAAAGTGGAGTTTGTCTTTTCCTATGGACCAGAGAAAATTCAAGGCATGGAACACCTGGAGAAT
GGGCCCAGCGTATCTGTAGACTATAACACTTCTGACCCCCTCATCCGCTGGGACTCCTATGACAACTTCA
GTGGGCATCGTGAGGATGGCATGGAAGAAGTGGTGGGACACACCCAAGGGCCGCTGGATGGGAGCCTGTA
CGCCAAGGTGAAGAAGAAGGATTCCCTGAATGGCAGTTCGGGGCCTGTCACTACTGCACGGCCTGCCCTG
TCAGCCACTCCCAACCACGTGGAACACACCCTGTCTGTGAGCAGCGACTCTGGCAACTCCACAGCCTCCA
CTAAGACAGACAAGACCGATGAGCCAGTCTCTGGGGCTACCACTGCCCCTGCTGCCCTGAGTCCTCAGGA
GAAGAAAGAGCTGGACCGCCTACTAAGTGGCTTTGGTGTGGATAGAGAAAAGCAAGGCGCCATGTACCGG
GCTCAGCAACTCAGATCCCATCCAGGCGGGGGCCCGACTGTGCCCTCCCCTGGCCGCCACATTGTCCCAG
CCCAGGTTCACGTCAATGGTGGGGCCCTGGCATCTGAGCGGGAGACAGACATTCTAGATGATGAGCTGCC
CATCCAGGACGGGCAGAGTGGGGGCAGCATGGGAACGCTGTCCTCCCTGGATGGGGTCACCAACACCAGT
GAAAGTGGCTACCCAGAGACCCTGTCCCCACTGACCAATGGCCTGGACAAACCCTATTCCACAGAACCTG
TGCTCAACGGCGGAGGCTACCCCTATGAGGCTGCCAACCGGGTGATTCCTGTCCACAGCAGTCACTCGGC
CCCCATTCGACCCTCCTACTCTGCTCAGGAGGGTTTAGCTGGCTACCAGCGTGAGGGACCCCACCCAGCC
TGGTCACAGCAAGTGACCAGTGCCCACTGTGGCTGTGACCCCAGTGGTCTATTCAGATCCCAGTCCTTTC
CAGATGTGGAGCCCCAGCTGCCCCAAGCTCCAACCCGTGGGGGTAGTAGCCGAGAGGCTGTGCAGAGGGG
TCTGAATTCATGGCAACAGCAGCAGCCCCACCCACCTCCCCGCCAGCAGGAGAGATCCCCACTGCAGAGT
CTTGCCCGCAGCAAGCCTAGCCCCCAGCTGTCAGCAGAGACCCCCGTAGCTGCTCTCCCAGAGTTCCCAA
GGGCAGCGTCCCAGCAGGAGATCGAGCAGTCCATCGAAACCCTCAATATGTTGATGCTGGACCTGGAGCC
AGCCTCCGCAGCTGCCCCTCTTCATAAGTCCCAGAGTGTCCCTGGGGCCTGGCCAGGGGCTTCTCCACTC
TCTTCCCAGCCCCTCTTGGGGTCTTCCCGCCAGTCCCACCCACTTACCCAGTCCCGATCTGGCTATATCC
CCAGTGGGCATTCTCTGGGAACCCCGGAGCTGGTCTCTTCTGGCAGGCCTTATTCACCTTACGATTATCA
GCTGCATCCAGCTGGATCCAACCAGAGTTTCCATCCAAAAAGTCCAGCCTCTTCCACCTTCCTTCCAAGC
CCTCATAGCTCTGCGGGGCCTCAGGAGCCCCCAGCCTCTCTCCCTGGTCTCATCGCTCAGCCCCAGCTCC
CACCAAAGGAAACTACATCAGATCCCTCCCGAACTCCAGAGGAAGAGCCGCTGAACCTGGAAGGGCTGGT
AGCCCATCGGGTAGCAGGGGTTCAGGCTCGGGAGAGGCAGCCTGCAGAGCCCCCAGGCCCACTCCGGAGG
CGGGCAGCCAGTGATGGACAGTATGAAAACCAGTCTCCGGAGGCCACATCCCCCCGTAGTCCTGGGGTCC
GCTCCCCCGTCCAGTGCGTCTCCCCTGAGCTGGCTCTTACCATTGCCCTCAATCCTGGAGGGCGCCCCAA
AGAGCCTCATTTGCATAGCTACAAGGAGGCCTTTGAGGAGATGGAGGGGACCTCCCCAAGCAGCCCGCCA
CACAGTGTGGCGCGCTCTCCTCCAGGTCTGGCCAAGACACCCCTGTCTGCTCTGGGCCTGAAACCCCACA
ACCCAGCAGACATCTTGCTGCACCCCACAGGTGAGCCCCGGAGCTATGTGGAGTCCGTGGCGAGGACAGC
GGTGGCAGGGCCTCGAGCTCAGGACGTTGAGCCTAAGAGCTTCAGCGCACCAGCTGCTCACGCCTATGGG
CACGAGACACCCCTGAGGAACGGGACCCCAGGGGGCTCCTTTGTCTCCCCGAGCCCCCTCTCCACAAGCA
GCCCCATCCTCAGTGCTGACAGCACTTCCGTGGGCAGTTTCCCATCAGTGGTGAGCAGTGACCAGGGTCC
CCGGACACCCTTCCAGCCTATGCTGGACTCCAGCATCCGCTCAGGCAGCTTGGGGCAGCCGAGCCCTGCA
GCACTGAGTTATCAGAGCTCCTCGCCTGTCCCTGTTGGTGGCAGCAGCTACAACAGCCCTGACTACTCCC
TCCAACCATTCAGCTCTTCTCCAGAAAGCCAAGGCCAGCCACAGTACAGTGCGGCCAGTGTCCACATGGT
ACCTGGGAGCCCTCAGGCACGACACAGGACAGTGGGTACCAACACTCCACCTAGCCCTGGTTTTGGCCGG
CGGGCCGTCAACCCCACCATGGCTGCCCCTGGTAGTCCCAGTTTGAGCCATCGGCAGGTGATGGGTCCAT
CTGGTCCAGGTTTCCATGGTAACGTGGTTTCTGGCCACCCAGCCAGTGCAGCTACCACTCCTGGAAGCCC
CAGCCTGGGCCGGCACCCAGTGGGAAGCCATCAAGTTCCAGGCCTCCACAGCAGTGTGGTCACCACTCCG
GGAAGCCCAAGCCTGGGCCGACACCCTGGTGCCCACCAAGGGAATCTGGCCTCCAGTCTCCACAGCAATG
CAGTCATCAGCCCTGGGAGCCCAAGCTTGGGCCGGCACCTGGGTGGGTCTGGATCCGTGGTTCCTGGAAG
CCCCAGCTTGGACCGGCATGCAGCTTATGGTGGCTACTCTACCCCTGAGGACCGAAGACCAACACTGTCC
CGGCAAAGCAGTGCCTCTGGCTACCAGGCCCCATCCACACCGTCATTCCCTGTCTCTCCTGCCTACTACC
CTGGCCTGAGCAGCCCTGCCACCTCACCCTCGCCAGACTCAGCAGCCTTCCGGCAGGGGAGCCCCACACC
AGCCTTACCAGAGAAGCGAAGAATGTCAGTGGGAGACCGGGCAGGCAGCCTCCCCAACTATGCCACCATC
AATGGGAAAGTGTCTTCCTCGCCTGTCGCCAATGGCATGGCCAGTGGGAGCAGCACCGTCTCCTTCTCTC
ACACGCTTCCGGACTTTTCTAAGTATTCGATGCCAGACAATAGTCCGGAGACTCGGGCTAAAGTGAAGTT
TGTCCAGGACACTTCCAAGTATTGGTACAAGCCTGAGATCTCCAGAGAACAGGCCATCGCACTCCTAAAG
GACCAGGAGCCAGGAGCCTTCATCATCCGGGACAGCCACTCCTTCCGAGGGGCTTATGGGCTGGCCATGA
AGGTGTCCTCACCCCCTCCAACCATCACTCAGCAGGGCAAGAAAGGAGACATGACCCATGAGCTGGTGAG
GCACTTTCTGATCGAGACAGGCCCTAGAGGAGTGAAGCTCAAGGGTTGTCCCAATGAGCCAAACTTTGGT
TCCCTTTCTGCCCTGGTCTATCAGCACTCCGTCATCCCACTGGCCCTGCCCTGTAAACTGGTCATTCCAA
GCCGAGACCCCACAGATGAATCAAAAGATAGCTCAGGCCCTGCCAACTCAACCACTGACCTGCTGAAGCA
AGGAGCAGCTTGCAATGTGCTCTTCGTCAACTCTGTGGATATGGAGTCACTCACCGGGCCACAGGCCATT
TCCAAAGCCACATCTGAGACTCTGGCTGCCGACCCCACACCGGCTGCCACCATTGTTCACTTCAAGGTCT
CTGCCCAAGGAATCACACTGACTGACAATCAAAGAAAGCTCTTCTTTAGAAGACACTACCCCCTCAACAC
TGTCACCTTCTGTGACCTGGATCCACAAGAAAGAAAGTGGATGAAGACAGAGGGAGGCGCCCCTGCTAAG
CTCTTTGGCTTCGTGGCCCGGAAGCAGGGCAGCACCACAGACAACGCTTGCCACCTCTTCGCAGAGCTTG
ACCCCAACCAGCCTGCGTCTGCCATCGTCAACTTCGTCTCCAAGGTCATGCTGAGTGCTGGCCAGAAGAG
ATGA

Translation (1867 aa):
MGCTVSLVCCEALEPLPSCGPQPPGTPPGPARPERCEPGGAAPDPRRRLLLQPEDLEAPKTHHFKVKAFK
KVKPCGICRQAITREGCVCKVCSFSCHRKCQAKVAAPCVPPSSHELVPITTETVPKNVVDVGEGDCRVGS
SPKNLEEGGSMRVSPSIQPQPQSQPTSLSRNTSVSRAMEDSCELDLVYVTERIIAVSFPSTANEENFRSN
LREVAQMLKSKHGGNYLLFNLSEQRPDITKLHAKVLEFGWPDLHTPALEKICSVCKAMDTWLNADPHNVV
VLHNKGNRGRIGVVIAAYLHYSNISASADQALDRFAMKRFYEDKIVPIGQPSQRRYVHYFSGLLSGSIKM
NNKPLFLHHVIMHGIPNFESKGGCRPFLRIYQAMQPVYTSGIYNIPGDSQASICITIEPGLLLKGDILLK
CYHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDLDEAFKDDRFPDYGKVEFVFSYGPEKIQGMEHLEN
GPSVSVDYNTSDPLIRWDSYDNFSGHREDGMEEVVGHTQGPLDGSLYAKVKKKDSLNGSSGPVTTARPAL
SATPNHVEHTLSVSSDSGNSTASTKTDKTDEPVSGATTAPAALSPQEKKELDRLLSGFGVDREKQGAMYR
AQQLRSHPGGGPTVPSPGRHIVPAQVHVNGGALASERETDILDDELPIQDGQSGGSMGTLSSLDGVTNTS
ESGYPETLSPLTNGLDKPYSTEPVLNGGGYPYEAANRVIPVHSSHSAPIRPSYSAQEGLAGYQREGPHPA
WSQQVTSAHCGCDPSGLFRSQSFPDVEPQLPQAPTRGGSSREAVQRGLNSWQQQQPHPPPRQQERSPLQS
LARSKPSPQLSAETPVAALPEFPRAASQQEIEQSIETLNMLMLDLEPASAAAPLHKSQSVPGAWPGASPL
SSQPLLGSSRQSHPLTQSRSGYIPSGHSLGTPELVSSGRPYSPYDYQLHPAGSNQSFHPKSPASSTFLPS
PHSSAGPQEPPASLPGLIAQPQLPPKETTSDPSRTPEEEPLNLEGLVAHRVAGVQARERQPAEPPGPLRR
RAASDGQYENQSPEATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYKEAFEEMEGTSPSSPP
HSVARSPPGLAKTPLSALGLKPHNPADILLHPTGEPRSYVESVARTAVAGPRAQDVEPKSFSAPAAHAYG
HETPLRNGTPGGSFVSPSPLSTSSPILSADSTSVGSFPSVVSSDQGPRTPFQPMLDSSIRSGSLGQPSPA
ALSYQSSSPVPVGGSSYNSPDYSLQPFSSSPESQGQPQYSAASVHMVPGSPQARHRTVGTNTPPSPGFGR
RAVNPTMAAPGSPSLSHRQVMGPSGPGFHGNVVSGHPASAATTPGSPSLGRHPVGSHQVPGLHSSVVTTP
GSPSLGRHPGAHQGNLASSLHSNAVISPGSPSLGRHLGGSGSVVPGSPSLDRHAAYGGYSTPEDRRPTLS
RQSSASGYQAPSTPSFPVSPAYYPGLSSPATSPSPDSAAFRQGSPTPALPEKRRMSVGDRAGSLPNYATI
NGKVSSSPVANGMASGSSTVSFSHTLPDFSKYSMPDNSPETRAKVKFVQDTSKYWYKPEISREQAIALLK
DQEPGAFIIRDSHSFRGAYGLAMKVSSPPPTITQQGKKGDMTHELVRHFLIETGPRGVKLKGCPNEPNFG
SLSALVYQHSVIPLALPCKLVIPSRDPTDESKDSSGPANSTTDLLKQGAACNVLFVNSVDMESLTGPQAI
SKATSETLAADPTPAATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWMKTEGGAPAK
LFGFVARKQGSTTDNACHLFAELDPNQPASAIVNFVSKVMLSAGQKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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