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Report for CCDS48330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48330.1 Public Mus musculus 1 Gal3st2c 23 108 98 CCDS HistoryNCBI Gene:619597Re-query CCDS DB by CCDS ID:48330.1Re-query CCDS DB by GeneID:619597See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097632.4 ENSMUSP00000095234.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097632.4Link to Ensembl Protein Viewer:ENSMUSP00000095234.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097632Re-query CCDS DB by Protein ID:ENSMUSP00000095234
Original member Current member NCBI NM_001039219.3 NP_001034308.1 Accepted alive Link to Nucleotide Sequence:NM_001039219.3Link to Protein Sequence:NP_001034308.1Re-query CCDS DB by Nucleotide ID:NM_001039219Re-query CCDS DB by Protein ID:NP_001034308Link to BLAST:NP_001034308.1

Chromosomal Locations for CCDS 48330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93996378 93996403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 94006918 94007004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 94008041 94008299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 94008707 94009525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGTCCATCCTGAGAGGCACACAGAGGTCCTTCCAGGTGGCACTCTGGTTCCTGGTCCTGGCCGTGTTCC
TGCTGGTTGTTTTCCTGCATGTGGACTTCAGACTACTTATACCGGACAAGGTCCAGGAACCACCGGTCAC
AAACATCATGTTCCTCAAAACGCACAAGACAGCCAGCAGTACAATCCTCAACATCCTCTACCGCTTCTCA
GAGTCTCACAACCTATCCACAGCGCTGCCCGAGGGCTCTAGAGTCCATCTGGGTTACCCCTGGCTTTTTG
TGACACGGTATGTGGAGGGCCTGAAGCAGGATGCCCACCTGCAGCATCACTTTAACATCATGTGCAACCA
CCTTCGGTTCAACTATCCTGAGGTGCAGAAAGTCATGCCCAGGGACACTTTCTACTTCTCCATCCTCCGG
AACCCAGTTTTCCAGCTGGAGTCCTCCTTCATCTACTATAAGGACTATGCACCTGCCTTCCAGAGAGCCA
AGAGCCTGGACGAATTCCTGGCAGATCCGTGGAAGTACTACAAAGCTAGTGTGAGCCTGGAAAATGTCTA
TGCGAAAAACAACATGTGGTTTGATTTTGGCTTTGACAACAACGCCCCAGCAGACAAGGACTATGTTCGC
AAATGCCTTGCGGAGGTGGAGCAGCGATTCCATCTGGTGCTCATTGCAGACTACTTCGATGAGTCTATGG
TGCTGCTGCGCAGAAGGCTGCGCTGGCAGCTGGATGATGTCGTGTCCTTCAAGCTGAACGTGCGCAGCCA
GAGCACTGTCTCCCACCTGACGCCTGAGAGCCAGGAGCGTGTCCAGCACTGGTGTGCGCTGGACTGGCAG
CTCTACCAGCATTTCAATCGCACGTTTTGGACCCAGCTGCATGCGGAGCTAAGCCCACGCCAGCTCACAG
AAGAGGTGGAGCAGCTGCGGGAGAGGCAGCGCGAGCTCATGGCCCTGTGTCTTCAGGATCCAGAGCCCAA
GAACCTGACACACATAGATGACCGAAATCTGCGCCCTTACCAGAGTGGAAAGGCTAAAATTCTGGGCTAC
AAACTTAGGCATGGTCTGGACACCACCACACTGCATATCTGTCAGAGAATGGCGATGCCCGAGCTCCAGC
ACATGGCCCATATGTACTCTCTGCAGTTTCCCGACAAGACTCCCAAGGATATCCCATTCCTGAAAAAGTA
G

Translation (396 aa):
MSILRGTQRSFQVALWFLVLAVFLLVVFLHVDFRLLIPDKVQEPPVTNIMFLKTHKTASSTILNILYRFS
ESHNLSTALPEGSRVHLGYPWLFVTRYVEGLKQDAHLQHHFNIMCNHLRFNYPEVQKVMPRDTFYFSILR
NPVFQLESSFIYYKDYAPAFQRAKSLDEFLADPWKYYKASVSLENVYAKNNMWFDFGFDNNAPADKDYVR
KCLAEVEQRFHLVLIADYFDESMVLLRRRLRWQLDDVVSFKLNVRSQSTVSHLTPESQERVQHWCALDWQ
LYQHFNRTFWTQLHAELSPRQLTEEVEQLRERQRELMALCLQDPEPKNLTHIDDRNLRPYQSGKAKILGY
KLRHGLDTTTLHICQRMAMPELQHMAHMYSLQFPDKTPKDIPFLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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