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Report for CCDS4834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4834.1 Public Homo sapiens 6 RNF8 24 110 108 CCDS HistoryNCBI Gene:9025Re-query CCDS DB by CCDS ID:4834.1Re-query CCDS DB by GeneID:9025See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4834.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373479.9 ENSP00000362578.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373479.9Link to Ensembl Protein Viewer:ENSP00000362578.4Re-query CCDS DB by Nucleotide ID:ENST00000373479Re-query CCDS DB by Protein ID:ENSP00000362578
Original member Current member NCBI NM_003958.4 NP_003949.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003958.4Link to Protein Sequence:NP_003949.1Re-query CCDS DB by Nucleotide ID:NM_003958Re-query CCDS DB by Protein ID:NP_003949Link to BLAST:NP_003949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003949.1 485 O76064-1 485 100% 0 0

Chromosomal Locations for CCDS 4834.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37354165 37354275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37360446 37360574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37368484 37369218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37371512 37371574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37374620 37374709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37376926 37377033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37381150 37381354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37390742 37390758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGGGGAGCCCGGCTTCTTCGTCACAGGAGACCGCGCCGGTGGCCGGAGCTGGTGCCTGCGGCGGGTGG
GGATGAGCGCCGGGTGGCTGCTGCTGGAAGATGGGTGCGAGGTGACTGTAGGACGAGGATTTGGTGTCAC
ATACCAACTGGTATCAAAAATCTGCCCCCTGATGATTTCTCGAAACCACTGTGTTTTGAAGCAGAATCCT
GAGGGCCAATGGACAATTATGGACAACAAGAGTCTAAATGGTGTTTGGCTGAACAGAGCGCGTCTGGAAC
CTTTAAGGGTCTATTCCATTCATCAGGGAGACTACATCCAACTTGGAGTGCCTCTGGAAAATAAGGAGAA
TGCGGAGTATGAATATGAAGTTACTGAAGAAGACTGGGAGACAATATATCCTTGTCTTTCCCCAAAGAAT
GACCAAATGATAGAAAAAAATAAGGAATTGAGAACTAAAAGGAAATTCAGTTTGGATGAATTAGCAGGTC
CTGGAGCTGAAGGCCCCTCAAATTTGAAATCCAAAATAAATAAAGTGTCTTGTGAATCTGGTCAGCCAGT
GAAATCACAGGGGAAAGGTGAAGTGGCCAGTACACCCTCTGACAATTTGGATCCTAAGTTGACTGCCCTT
GAGCCAAGTAAGACCACAGGGGCTCCCATTTACCCTGGCTTCCCCAAAGTCACAGAGGTTCATCATGAGC
AGAAAGCCTCAAACTCTTCAGCATCTCAGAGAAGCTTACAGATGTTTAAGGTGACCATGTCCAGGATTCT
GAGGCTCAAAATACAGATGCAGGAAAAACATGAAGCCGTTATGAATGTGAAAAAGCAGACCCAAAAGGGG
AACTCAAAGAAAGTTGTGCAAATGGAGCAGGAACTTCAGGACTTACAGTCCCAGCTGTGTGCAGAGCAGG
CTCAGCAGCAGGCAAGAGTGGAGCAACTAGAGAAGACTTTCCAGGAAGAGGAACAGCATCTTCAGGGTTT
GGAGATAGCCCAAGGAGAAAAGGACCTGAAGCAACAGCTGGCCCAGGCTCTGCAGGAGCATTGGGCTCTA
ATGGAAGAGCTAAATCGCAGCAAGAAGGACTTTGAAGCAATCATTCAAGCCAAGAACAAAGAATTAGAGC
AGACCAAGGAAGAGAAGGAGAAGATGCAAGCACAGAAGGAAGAAGTTCTTAGCCACATGAATGATGTGCT
AGAGAATGAGCTCCAATGTATTATTTGTTCAGAATACTTCATTGAGGCTGTCACCTTGAACTGTGCCCAC
AGTTTCTGCTCCTACTGTATCAATGAATGGATGAAGCGGAAGATAGAATGCCCCATTTGTCGGAAGGACA
TTAAGTCCAAAACGTACTCTTTGGTTCTGGACAATTGCATTAATAAGATGGTAAATAATCTGAGCTCAGA
AGTGAAAGAACGACGAATTGTTCTCATTAGGGAACGAAAAGCAAAGAGATTGTTCTGA

Translation (485 aa):
MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP
EGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKN
DQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKLTAL
EPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKG
NSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWAL
MEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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