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Report for CCDS48354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48354.1 Public Mus musculus 1 Eif2d 23 108 98 CCDS HistoryNCBI Gene:16865Re-query CCDS DB by CCDS ID:48354.1Re-query CCDS DB by GeneID:16865See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068805.13 ENSMUSP00000063894.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068805.13Link to Ensembl Protein Viewer:ENSMUSP00000063894.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068805Re-query CCDS DB by Protein ID:ENSMUSP00000063894
Original member Current member EBI ENSMUST00000151874.7 ENSMUSP00000138061.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151874.7Link to Ensembl Protein Viewer:ENSMUSP00000138061.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151874Re-query CCDS DB by Protein ID:ENSMUSP00000138061
Original member NCBI NM_001136070.1 NP_001129542.1 Updated not alive Link to Nucleotide Sequence:NM_001136070.1Link to Protein Sequence:NP_001129542.1Re-query CCDS DB by Nucleotide ID:NM_001136070Re-query CCDS DB by Protein ID:NP_001129542
Current member NCBI NM_001136070.2 NP_001129542.1 Accepted alive Link to Nucleotide Sequence:NM_001136070.2Link to Protein Sequence:NP_001129542.1Re-query CCDS DB by Nucleotide ID:NM_001136070Re-query CCDS DB by Protein ID:NP_001129542Link to BLAST:NP_001129542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129542.1 570 Q61211-1 570 100% 0 0

Chromosomal Locations for CCDS 48354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131153370 131153425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131154229 131154419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131155168 131155251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131155633 131155723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131158192 131158299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131160410 131160624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131161285 131161402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131163520 131163565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131164403 131164506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131164620 131164769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131165120 131165209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131166327 131166422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131168120 131168240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131170937 131171111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131173304 131173371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGTTCGCTAAGGCCTTTCGGGTCAAGTCCAACACAGCCATCAAGGGCTCGGACAGGAGAAAGCTCCGGG
CCGATGTGACAGCTGCTTTCCCTGCCCTGGGAACAGATCAGATCTCTGAATTGATACCTGGAAAGGAAGA
GCTAAATGTTGTGAAGTTGTATGTTCACAAAGGGGATTCGGTGACTGTGTACACGAGTGGTGGTAACCCC
ATCCTATTTGAACTGGAGAAAAATTTGTATCCAACAGTGTACACACTGTGGGCCTATCCGGATATTCTAC
CAACTTTTATAACATGGCCTCTGGTATTGGAAAAACTGGTCGGGGGAGCAGATTTGATGCTGCCAGGGGT
AGTGGTGCCCCCTACTGGTCTTCCTCAAGTACAGCAAGGCGACCTCTGTGCCATTGCCTTGGTGGGGAAC
AGAGCGCCCGTTGCAATTGGAGTGGCCGCCATGTCCACAGCTCAGATGCTGGCTTCAGGCCTGAAGGGAA
AAGGTGTCTCTGTGCTCCACACTTATCAGGACCACTTGTGGAGATCTGGAGACAAGTCCTCTCCACCTGC
CATTGCCCCACTGGACCCCACAGATAGCTGCGAAGAGAAGGTGCACCTTGGTCTGCAGGGAAACCTGAAG
AGCCTGACCCTGGACGGAGAGGAGGAGAACGGGCAGGTTCCTCTCCGAGAAGCCTCTGAGGACACCAGCT
CCAGGGCCCCGAGCCAGGATTCCTTGGACGGCAAGCCCCTTCAGGAACAAATGGACGATCTGTTACTGCG
GTGCTTCCTTCATGCCCTGAAGAGTCGAGTCAAGAAAGCTGACCTCCCGTTGCTCACCAGCACTCTCCTT
GGCAGTCACATGTTCTCCTGCTGTCCTGAAGGACAGCAACTGGATATAAAGAAGTCAAGCTATAAAAAGC
TCTCTAAGTTCCTGCAGCACATGCAGCAGGAGCAGATTGTCCAGGTCAAGGAGCTGAGCAAAGGGGTGGA
GAGCATTGTGGCTGTGGACTGGAGGCACCCGAGGATCACGTCTTTCGTCATCCCCGAGCCTTCCCTGACT
TCCCAGACTGTCCAGGAAGTTAGCAGGGAACAGCCCTATCTCCCTCCAGATATAAAATCCCTCTACTGTG
TCCCAGCCAACATGACCCAGCTCTTCCTGGAGTCTGGCCACAAGAAGGGGAGCACCCTTGAGGGCAGTGA
GGTCCGAAAGATCATCACGGACTATGCCAAGAGAAACAGACTGGTGGATGCAGACAACAGAAATCTGGTG
AAGTTGGATCCTATCTTATGTGACTGCATCTTAGAGAAAAATGAGCAGCACTTGGTCACGAAGCTCCCAT
GGGACTGTCTCCTGACCAGGTGTTTGAAAAATATGCAGCCTGCCTACCAAGTAACATTTCCTGGCCAGGA
ACCCATTCTAAAGAAAGGGAAACTCTGTCCAATTGATATCACCCTTGCACTGAAGACCTATAATAAAAAG
GTGACTGTGGTCCGGAACTTGGAGACCTATGGTCTAGATCCGTGCTCAGTGGCCGCCATTCTCCAGCAGC
GATGTCAGGCAAGCACCATCGTCTCTCCTGCCCCTGGGGCCAAAGACAGTCTGCAGGTGCAGGTCCAGGG
AAACCAGATCCACCACCTTGGCCAGCTACTGCTTGAAGAGTATCGGCTCCCTGGAAAATACATCCAAGGC
CTAGAAAAGGCCCCCAAACCTGGCAAGAAGTGA

Translation (570 aa):
MFAKAFRVKSNTAIKGSDRRKLRADVTAAFPALGTDQISELIPGKEELNVVKLYVHKGDSVTVYTSGGNP
ILFELEKNLYPTVYTLWAYPDILPTFITWPLVLEKLVGGADLMLPGVVVPPTGLPQVQQGDLCAIALVGN
RAPVAIGVAAMSTAQMLASGLKGKGVSVLHTYQDHLWRSGDKSSPPAIAPLDPTDSCEEKVHLGLQGNLK
SLTLDGEEENGQVPLREASEDTSSRAPSQDSLDGKPLQEQMDDLLLRCFLHALKSRVKKADLPLLTSTLL
GSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKELSKGVESIVAVDWRHPRITSFVIPEPSLT
SQTVQEVSREQPYLPPDIKSLYCVPANMTQLFLESGHKKGSTLEGSEVRKIITDYAKRNRLVDADNRNLV
KLDPILCDCILEKNEQHLVTKLPWDCLLTRCLKNMQPAYQVTFPGQEPILKKGKLCPIDITLALKTYNKK
VTVVRNLETYGLDPCSVAAILQQRCQASTIVSPAPGAKDSLQVQVQGNQIHHLGQLLLEEYRLPGKYIQG
LEKAPKPGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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