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Report for CCDS48370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48370.1 Public Mus musculus 1 Mgat4e 23 108 98 CCDS HistoryNCBI Gene:71001Re-query CCDS DB by CCDS ID:48370.1Re-query CCDS DB by GeneID:71001See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052911.7 ENSMUSP00000125929.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052911.7Link to Ensembl Protein Viewer:ENSMUSP00000125929.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052911Re-query CCDS DB by Protein ID:ENSMUSP00000125929
Original member Current member EBI ENSMUST00000172898.1 ENSMUSP00000133717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172898.1Link to Ensembl Protein Viewer:ENSMUSP00000133717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172898Re-query CCDS DB by Protein ID:ENSMUSP00000133717
Original member Current member NCBI NM_001145300.2 NP_001138772.1 Accepted alive Link to Nucleotide Sequence:NM_001145300.2Link to Protein Sequence:NP_001138772.1Re-query CCDS DB by Nucleotide ID:NM_001145300Re-query CCDS DB by Protein ID:NP_001138772Link to BLAST:NP_001138772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138772.1 439 A6H684-1 439 100% 0 0

Chromosomal Locations for CCDS 48370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134540985 134542165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134546884 134547022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGAGGGAGGACTGAGGACAGGCAGGCTGCCCAAGGCCCCTGAGCTTTCCCTCCAAAGCTTTCCCTCTG
AGTGGAGCTGGGTGTGGACCTACCCATTATTCCATAAACTAGCTGCATTTGCTTGTCACGCTTCTCAAGC
ATGGCTGACAGTGGGGATCACCTCAGAGTCACGAGAGGGTCCAAATGGCCTCTTGGATACACTGGCCTCC
CTGTACCACACCTCCTCCACATCCGAGCAGAAACAAATGACAGTGCTGGTCCACCTGGCTGACTCTGATC
CCACCTGGCTCAGGAGAACTATCATCCGGATTTCAAGTCTCTACAGGTCCCAGATCTTGACAGGGCAATT
GTTACTGATCCACGCCCCACCTGATGCCTACCCCGCTGTGAACGATGCCCAGAACAAGGTCTCTCGGGGG
CAGATCTACTCCAAGCAGAATGTAGACCATGCCTTCCTAATGAGCTTTGCCACGAAACTCTCCACTTACT
TCCTCTTGATAGAGGACAATGTCTTTTGTGCCCCCAATTTTGTCAACCACATTCGCTCGAAGGTGGGCTA
CAGGAAGCCCAACACATGGGTGCTCCTCGAGTTCTCTAATATGGGCTTCCTGGGCAAACTTCTCCACAGC
AGGGACCTTCCACTCCTGGCCCACTTCCTCCTCCTCTTCCACAAGGAGCGACCTCTCAACTGGCTGCTCC
TTCACTTCCGCACCCTCCTGGGCCAGCAAAGTTCAATCCTCTGCCGACCATTTCTCTTTTACCACAGGTT
GACTCACCTCACTTTTGAGAACAAGACCTTAATAGGCCATGAAAAGGATCCTCCTGATCCGTATACCCTC
AGTGGAACTGTTTACACGGATATGAGGTTCTCTGATACCCACTCCCCGCAGGAGGCCTATACTCTGGATG
AGTCGTTCTTCTGGTCCTACAATGTCACTACAGGGAACTATTTGACAGTGATTTTGAACAATCCAGCGAA
CCTCAACAGAGTGCAAGTAAGAACGGGCTCCATCACGGATGGAAAGTACATCCTAGAAAAAGGACAGGTG
GAGCTAGGCTATGATCCTGAAGGAACACCGCCACAATGCACCAGCTTTACCCTGCTGGGCCGGCTTGTGC
AAGGGCAGATGGATCAGTTCATTCTGGAAAGCATTGGGTATAAAGTAAGCTGCGTGAAGCTGGCAGTGAA
CGCTAATCAGGTCGGTGGTCTCATGATCAGGCATATCTACATCTGGGGGGAAAATGCCAAAAACAGAAAA
GATGTCCAAATTGACAACGATGACGATGACGACGACGATGACTACGACGACGATAGTTGA

Translation (439 aa):
MEGGLRTGRLPKAPELSLQSFPSEWSWVWTYPLFHKLAAFACHASQAWLTVGITSESREGPNGLLDTLAS
LYHTSSTSEQKQMTVLVHLADSDPTWLRRTIIRISSLYRSQILTGQLLLIHAPPDAYPAVNDAQNKVSRG
QIYSKQNVDHAFLMSFATKLSTYFLLIEDNVFCAPNFVNHIRSKVGYRKPNTWVLLEFSNMGFLGKLLHS
RDLPLLAHFLLLFHKERPLNWLLLHFRTLLGQQSSILCRPFLFYHRLTHLTFENKTLIGHEKDPPDPYTL
SGTVYTDMRFSDTHSPQEAYTLDESFFWSYNVTTGNYLTVILNNPANLNRVQVRTGSITDGKYILEKGQV
ELGYDPEGTPPQCTSFTLLGRLVQGQMDQFILESIGYKVSCVKLAVNANQVGGLMIRHIYIWGENAKNRK
DVQIDNDDDDDDDDYDDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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