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Report for CCDS48408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48408.1 Public Mus musculus 1 Rasal2 23 108 98 CCDS HistoryNCBI Gene:226525Re-query CCDS DB by CCDS ID:48408.1Re-query CCDS DB by GeneID:226525See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078308.12 ENSMUSP00000077423.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078308.12Link to Ensembl Protein Viewer:ENSMUSP00000077423.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078308Re-query CCDS DB by Protein ID:ENSMUSP00000077423
Original member NCBI NM_177644.5 NP_808312.3 Updated not alive Link to Nucleotide Sequence:NM_177644.5Link to Protein Sequence:NP_808312.3Re-query CCDS DB by Nucleotide ID:NM_177644Re-query CCDS DB by Protein ID:NP_808312
Current member NCBI NM_177644.6 NP_808312.3 Accepted alive Link to Nucleotide Sequence:NM_177644.6Link to Protein Sequence:NP_808312.3Re-query CCDS DB by Nucleotide ID:NM_177644Re-query CCDS DB by Protein ID:NP_808312Link to BLAST:NP_808312.3

Chromosomal Locations for CCDS 48408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 157140711 157140875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157146190 157146277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157147630 157147832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157149773 157149907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157156906 157157767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157158659 157158858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157161125 157161326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157163703 157163939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157164607 157164751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157174143 157174287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157175663 157176217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157177646 157177744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157179099 157179252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157192747 157192856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157230039 157230145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157286731 157286854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157299137 157299264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157411737 157411938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3861 nt):
ATGGAGCTGTCTCCGTCGTCCGGAGGAGCCGCGGAGGCGCTGTCGTGGCCGGAGATGTTCACGGGGCTGG
AGTCCGACTCGCCGCTGCCCCCGGAGGATCTGGACGCGGTCGTCCCAGTCAGCGGAGCAGTGGCCGGTGG
CATGCTGGATCGGATCCTTCTGGAGTCAGTGTGCCAGCAGCAGAGCTGGGTCCGGGTGTTCGATGTAAAA
GGCCCACCAACCCACCGTCTGTCTTGTGGTCAGTCACCCTATACTGAGACGACATCATGGGAGAGGAAGT
ACTGCATCCTCACAGACAGCCAGTTGGTGTTGCTCAACAAGGAGAAGGAGATGCCTGTGGAAGGACAGGA
TCAACAGACAGATTCCACCAAAGGGCGCTGTCTGAGGAGAACTGTCAGTGTTCCTTCAGAGGGTCAGTTT
CCGGAGTACCCACAGGAGGGCACCACTAAACTAGAGGTGCCAGCAGAAAGGTCCCCCCGCAGACGGAGCA
TCTCAGGGACCAGCACATCAGAGAAACCCAACTCCATGGACACTGCGAATACCTCTCCTTTTAAAGTACC
AGGATTCTTCAGCAAGCGCCTGAAAGGTTCCATCAAGAGGACCAAAAGCCAGTCGAAGCTTGACAGAAAC
ACAAGCTTTCGGCTTCCATCCCTTCGCAATGCAGATGACAGGTCTCGAGGTCTGCCTAAACTGAAAGAGT
CGCGTTCCCATGAGTCCCTGCTGAGCCCATGCAGTGCAGTGGAGTGTCTGGATCTAGGTAGAGGAGAGCC
AGTCTCAGTGAAGCCACTGCACAGTAGCATCCTCGGACAGGACTTCTGCTTCGAGGTCACCTACTTAAGT
GGAAGTAAATGCTTTAGCTGTAGCTCTGCCTCCGAGAGAGATAAGTGGATGGAAAACCTTCGAAGGACCG
TTCAGCCAAATAAGGACAATTGTAGACGAGCTGAAAATGTTCTCCGTTTATGGATCATTGAAGCCAAGGA
CCTTGCCCCTAAAAAAAAATATTTCTGCGAACTGTGCCTTGATGATACCCTCTTTGCTCGTACAACCAGC
AAGACCAAAGCAGACAATATTTTTTGGGGTGAACATTTTGAATTCTATAGCCTTCCACCTCTTCATAGCA
TCACGGTTCATATTTATAAGGATGTGGAAAAAAAGAAAAAAAAGGACAAGAATAATTATGTAGGGCTAGT
CAATATCCCCACTGCCAGTGTGACTGGTCGCCAGTTTGTAGAAAAGTGGTACCCAGTGAGTACACCCACA
CCCAACAAAGGAAAGACAGGAGGACCTTCTATTCGGATTAAGTCACGTTTCCAAACTATCACCATTCTGC
CTATGGAGCAATACAAAGAGTTTGCAGAATTCATCACCAGCAACTACACCATGCTGTGTTCTGTTCTTGA
GCCAGTAATTAGTGTGAGGAATAAAGAGGAGTTGGCTTGTGCCTTAGTACACATTCTTCAAAGTACTGGC
AGAGCCAAGGATTTTCTGACTGACTTGGTGATGTCAGAGGTAGATCGTTGTGGAGAACATGATGTCTTGA
TCTTCAGAGAAAACACCATTGCCACTAAATCCATTGAGGAATACCTCAAGTTGGTGGGACAACAGTACCT
TCATGATGCACTCGGGGAGTTCATCAAAGCCTTGTATGAATCAGATGAGAACTGTGAAGTGGATCCCAGC
AAGTGTTCATCTAGTGAACTGATGGACCATCAGAGCAACCTGAAAATGTGCTGTGAGTTGGCTTTCTGCA
AGATCATCAACTCATACTGTGTCTTCCCGCGTGAGTTGAAAGAAGTGTTTGCATCATGGAAGCAGCAGTG
CCTGAACCGAGGCAAGCAAGACATCAGTGAGCGGCTCATCAGTGCCTCATTGTTTCTCCGTTTTCTTTGC
CCAGCCATTATGTCTCCCAGTCTTTTCAACCTGATGCAGGAATATCCTGATGACCGCACATCTCGGACAC
TAACTCTTATTGCCAAGGTCATTCAGAACCTGGCCAACTTTGCCAAGTTTGGTAACAAAGAGGAGTACAT
GGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGGTTCCTTTTGGAGATCTCTAAT
CCTGACACCATCTCAAACACCCCAGGCTTCGATGGTTACATTGATTTGGGCAGAGAGCTGTCAGTTTTGC
ATTCCTTACTATGGGAAGTAGTTTCCCAACTTGATAAGGGTGAAAATTCCTTTCTACAGGCAACTGTGGC
AAAACTGGGACCTCTCCCTCGTGTTCTTGCTGACATTACCAAGTCTCTGACTAATCCTACGCCAATACAG
CAGCAGCTAAGACGTTTCGCTGAGCACAGCTCCAGTCCAAACGTCAGCGGAAGCCTCTCCTCTGGGCTGC
AGAGAATATGTGAAGACCCCACTGACAGTGATTTGCATAAACTAAAGTCTCCAAGCCAGGATAACACAGA
CAGCTATTTCAGAGGAAAGACGTTATTGTTGGTTCAGCAAGCCTCCTCCCAGAGCATGACGTACTCTGAA
AAGGATGAAAAGGAAAACAGCCTTCCTAACGGTCGGAGCATCTCCCTCATGGACCTCCAGGACACTCATG
CTGCTCAGGCGGAGCATGCATCTGTCATGCTTGATGTGCCTATGCGCCTTGCAGGAAGCCAGCTTTCTAT
AACCCAGGTAGCTAGCATCAAACAGCTGCGGGAAACCCAGAGCACTCCCCAGAGTGCACCTCAAGTGAGA
AGACCCCTGCACCCAGCCTTGAACCAGCCAGGAAGTCTCCAGCCCTTGTCATTCCAGAATCCTGTCTATC
ACCTCAACAACCCAGTTCCAGCAATGCCAAAGGCCTCTGCGGATTCCAGTTTGGAGAACCTAAGCACTGC
CAGTTCTAGAAGCCAAAGCAATAGTGAAGACTTCAAACTCAGTGGACCCAGCAATAGCAGCATGGAAGAT
TTCACCAAAAGAAGCTCCCACAGTGAAGACTTCTCCAGGCGCCACACTGTACCAGACAGACACATACCTC
TTGCTCTACCACGACAAAATAGTACGGGGCAGTCCCAAATCCGAAAACTGGACCATTCTGGGTTAGGTGC
CCGAGCCAAAGCACCCCCATCTCTGCCACACAGTGCTTCCTTGCGTAGCACAGGGAGCATGTCAGTGGCG
TCTGCAGCCCTAATGGCTGAACCTGTGCAGAACGGGAGCCGGTCCAGGCAGCAGTCCTCTTCCTCCAGAG
AGAGCCCTGTTCCCAAAGTGAGAGCAATCCAGAGACAACAGACACAACAGGTTCAGTCACCTGTGGACTC
CGCTACAATGTCCCCAGTAGAAAGGACAGCAGCCTGGGTTCTGAACAATGGACAGTATGAAGAGGATGTG
GAAGAAACTGAACAAAATCAAGATGAAGCCAAGCATGCTGAAAAGTATGAACAAGAAATTACCAAGCTGA
AGGAGCGCCTACGAGTGTCCAGCCGGCGGTTGGAGGAGTATGAGCGCCGGCTGCTGGTGCAGGAGCAGCA
GATGCAGAAGCTGCTGCTGGAGTACAAGGCCCGGCTGGAGGATAGTGAGGAGCGGCTGCGCAGACAGCAG
GAGGAGAAGGACAGCCAGATGAAAAGCATCATCAGCAGGCTAATGGCTGTGGAAGAAGAATTAAAGAAAG
ATCATGCTGAGATGCAAGCAGTTATTGATGCAAAGCAGAAAATAATTGATGCACAGGAAAAGCGGATCGT
GTCCCTGGATTCAGCCAACACGAGACTGATGAGTGCGCTGACACAAGTGAAGGAGCGGTACAGCATGCAG
GTCCGCAATGGCATCTCTCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAATA
GCAGCTGCTGA

Translation (1286 aa):
MELSPSSGGAAEALSWPEMFTGLESDSPLPPEDLDAVVPVSGAVAGGMLDRILLESVCQQQSWVRVFDVK
GPPTHRLSCGQSPYTETTSWERKYCILTDSQLVLLNKEKEMPVEGQDQQTDSTKGRCLRRTVSVPSEGQF
PEYPQEGTTKLEVPAERSPRRRSISGTSTSEKPNSMDTANTSPFKVPGFFSKRLKGSIKRTKSQSKLDRN
TSFRLPSLRNADDRSRGLPKLKESRSHESLLSPCSAVECLDLGRGEPVSVKPLHSSILGQDFCFEVTYLS
GSKCFSCSSASERDKWMENLRRTVQPNKDNCRRAENVLRLWIIEAKDLAPKKKYFCELCLDDTLFARTTS
KTKADNIFWGEHFEFYSLPPLHSITVHIYKDVEKKKKKDKNNYVGLVNIPTASVTGRQFVEKWYPVSTPT
PNKGKTGGPSIRIKSRFQTITILPMEQYKEFAEFITSNYTMLCSVLEPVISVRNKEELACALVHILQSTG
RAKDFLTDLVMSEVDRCGEHDVLIFRENTIATKSIEEYLKLVGQQYLHDALGEFIKALYESDENCEVDPS
KCSSSELMDHQSNLKMCCELAFCKIINSYCVFPRELKEVFASWKQQCLNRGKQDISERLISASLFLRFLC
PAIMSPSLFNLMQEYPDDRTSRTLTLIAKVIQNLANFAKFGNKEEYMAFMNDFLEHEWGGMKRFLLEISN
PDTISNTPGFDGYIDLGRELSVLHSLLWEVVSQLDKGENSFLQATVAKLGPLPRVLADITKSLTNPTPIQ
QQLRRFAEHSSSPNVSGSLSSGLQRICEDPTDSDLHKLKSPSQDNTDSYFRGKTLLLVQQASSQSMTYSE
KDEKENSLPNGRSISLMDLQDTHAAQAEHASVMLDVPMRLAGSQLSITQVASIKQLRETQSTPQSAPQVR
RPLHPALNQPGSLQPLSFQNPVYHLNNPVPAMPKASADSSLENLSTASSRSQSNSEDFKLSGPSNSSMED
FTKRSSHSEDFSRRHTVPDRHIPLALPRQNSTGQSQIRKLDHSGLGARAKAPPSLPHSASLRSTGSMSVA
SAALMAEPVQNGSRSRQQSSSSRESPVPKVRAIQRQQTQQVQSPVDSATMSPVERTAAWVLNNGQYEEDV
EETEQNQDEAKHAEKYEQEITKLKERLRVSSRRLEEYERRLLVQEQQMQKLLLEYKARLEDSEERLRRQQ
EEKDSQMKSIISRLMAVEEELKKDHAEMQAVIDAKQKIIDAQEKRIVSLDSANTRLMSALTQVKERYSMQ
VRNGISPTNPTKLSITENGEFKNSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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