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Report for CCDS48597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48597.1 Public Mus musculus 10 Rsph14 23 108 98 CCDS HistoryNCBI Gene:71236Re-query CCDS DB by CCDS ID:48597.1Re-query CCDS DB by GeneID:71236See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48597.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166088.7 ENSMUSP00000131632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166088.7Link to Ensembl Protein Viewer:ENSMUSP00000131632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166088Re-query CCDS DB by Protein ID:ENSMUSP00000131632
Original member Current member NCBI NM_001163533.1 NP_001157005.1 Accepted alive Link to Nucleotide Sequence:NM_001163533.1Link to Protein Sequence:NP_001157005.1Re-query CCDS DB by Nucleotide ID:NM_001163533Re-query CCDS DB by Protein ID:NP_001157005Link to BLAST:NP_001157005.1

Chromosomal Locations for CCDS 48597.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 74957542 74957783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 74959568 74959704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 74961507 74961732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75025046 75025164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75029703 75029805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75031114 75031361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75032524 75032573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGGCCAAGCGCTCTGGCTGGCAGACACCAGGAGACTTCACGCACTGAGCAGTTTCTACAGAGGTTCAT
TTTCAAAGCCCTTTGGCAGGTGTGAAAAGATGGCTCATGCCCGCATCTCCATGTATATGCCTCCTGACAT
CGACCCCACAAAAGCCGCCATTGCTTATGGCTGCCGGGCCTTGAGCAAGCTTAATGAGGAGCTACAGTCA
AGGGATCTCCTGACAAGGCAGAAAGCCCTAGTGGCTCTGTGTGACCTCATGCACGATCCTGAGTATGTCT
ACGAGGCCATCAACATAGGCTGCCTGGAGAGCCTGAAGACCCTGCTGCAGGATGATGATAACCTGGTACG
GATAAAGACCACGGAGGTTCTATACATCATGGCCACCCATTACGTAGGCAGAGTTGGCTTCTTAAAGCAT
GACATCATCCAAGCCCTGTCACTCCTGCTGAGTGATCACCAGACCCTCTGCCGGGAGAATCTACACCAGG
CATACAAGCATCTGGCACAGTTGCCTAAAGGGGCCCAGGGTATCGTCCAGAGTGGCCTGATCCCCTCGCT
GGTACGGAAGCTGCAGAAGGAGGAGGACCATATTCAGGAGATCATCTTGGACACTCTGGCGCTGTGCCTT
CAGGAGGACGCCACCGAGGCCCTAGAGAGCCAAGCCGTGCCCTGTTTAAAGGAGAAGCTCCTTAGCCAAA
ACTCTGAAATCCGCAGCAAAGCCGCCCGGGCGCTCATTGCCATCAGCATCCCGTTGGATGGCAAGAATCA
GGTGTGGAAGAATAAAGTCATTCCCATCCTGGTGACTCTGTTGTCAGACACGGATGAGGAGGTGAAGGCC
AATGCCGCCGGGGCTCTGATGCACGCCACAGTGACCACTGAAGGAAAATATGCAGCTCTGGATGCCAATG
CTATCGAACCACTCCTGGAGTTGCTTTCCACCAACCCCAAGACCAAGCTGTGTCTGAATGCCACAAAAGC
CCTCACCATGCTGGCCGAAGCCCCCGAGGGCCGTAAGTTATTGCTGTCCCATGTTCCCATCTTCCGTTAC
CTCCTTGCGCATAAAAACGAGGCCATACAGCGAGCAGCAGAAGTAGCCATCAAAGTGATTGAGTGGAAGC
CATGA

Translation (374 aa):
MGQALWLADTRRLHALSSFYRGSFSKPFGRCEKMAHARISMYMPPDIDPTKAAIAYGCRALSKLNEELQS
RDLLTRQKALVALCDLMHDPEYVYEAINIGCLESLKTLLQDDDNLVRIKTTEVLYIMATHYVGRVGFLKH
DIIQALSLLLSDHQTLCRENLHQAYKHLAQLPKGAQGIVQSGLIPSLVRKLQKEEDHIQEIILDTLALCL
QEDATEALESQAVPCLKEKLLSQNSEIRSKAARALIAISIPLDGKNQVWKNKVIPILVTLLSDTDEEVKA
NAAGALMHATVTTEGKYAALDANAIEPLLELLSTNPKTKLCLNATKALTMLAEAPEGRKLLLSHVPIFRY
LLAHKNEAIQRAAEVAIKVIEWKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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