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Report for CCDS48598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48598.1 Public Mus musculus 10 Specc1l 23 108 98 CCDS HistoryNCBI Gene:74392Re-query CCDS DB by CCDS ID:48598.1Re-query CCDS DB by GeneID:74392See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040105.7 ENSMUSP00000045099.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040105.7Link to Ensembl Protein Viewer:ENSMUSP00000045099.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040105Re-query CCDS DB by Protein ID:ENSMUSP00000045099
Original member Current member EBI ENSMUST00000105421.9 ENSMUSP00000101061.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105421.9Link to Ensembl Protein Viewer:ENSMUSP00000101061.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105421Re-query CCDS DB by Protein ID:ENSMUSP00000101061
Original member Current member NCBI NM_001145826.1 NP_001139298.1 Accepted alive Link to Nucleotide Sequence:NM_001145826.1Link to Protein Sequence:NP_001139298.1Re-query CCDS DB by Nucleotide ID:NM_001145826Re-query CCDS DB by Protein ID:NP_001139298Link to BLAST:NP_001139298.1

Chromosomal Locations for CCDS 48598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75229855 75229868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75230682 75230871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75241065 75241218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75245079 75246712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75248437 75248644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75257868 75257941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75258968 75259143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75261794 75261957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75263279 75263370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75267499 75267589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75274017 75274100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75276771 75276927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75279859 75279961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75307237 75307353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75308034 75308093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75309790 75309879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGTTGGAACTAAGGTTTGGTTGTAAATGCATCACCAAGAGGCAGCCCAGAATGAAGAAAGCAAACAGGA
GTGCTGGCTCAGTGCCTAAGGTGTCTGGGATAAGCAAACCGCAAACAGTAGAGAAAAGCAAGCCTGAGAA
CAGCTCTTCAGCACCCACAGGAGTCAAGCCTGTGAGGCCTGGGGCAGCAGCAGCCTTGTCAAAGACCAAG
AGCAATGATGACCTTTTAGCTGGAATGGCTGGAGGAGTAAACGTGACTAATGGTATTAAAGCAAAGAAAA
GCACCTGTTCATCTGCAGCGCCTTCAGCCCCCGCCCCTGCCATGACCATCTCGGAGAACAAGTCCAAGAT
CAGCACAGGCACTAGTTCCTCAGCCAAACGGAGTACTTCGGCTGGTAATAAAGAGTCCAGTTCTACTAGA
GAAAGATTACGTGAACGCACCCGGCTAAACCAGAGCAAAAAACTGCCCTCTGTAAGTCAGGGAGCTAATG
ATGTGGCACTGGCTAAACGTTCACGCAGCCGCACTGCTGCAGAGGGTGATATTCGTATGAGCAAGTCTAA
GTCGGACAATCAGATCAGTGACAAAGCTGCTTTGGAAGCCAAGGTGAAAGATCTCCTCACACTGGCGAAA
ACCAAGGATGTGGAAATTTTACATTTGAGAAATGAACTCCGAGACATGCGTGCTCAGCTGGGCATTAGTG
AGGACCATTGTGAAGGTGAGGACAGGTCTGAGGTGAAGGAAACTATTATTGCTCACCAGCCTACTGACGT
GGAGTCTACTCTCCTGCAGCTGCAGGAGCAGAATACAGCCATCCGCGAGGAGCTCAACCAGCTGAAGAAT
GAAAACAGAATGCTAAAGGACAGGCTCAATGCTTTGGGCTTTTCCCTAGAGCAAAGGCTGGACAATTCTG
AAAAACTATTTGGCTATCAGTCCCTGAGCCCAGAAATCACCCCTGGTAACCAGAGTGACGGAGGAGGAAC
TCTGACATCTTCGGTAGAAGGTTCTGCTCCTGGGTCGGTGGAAGATCTCCTGAGTCAGGATGAAAATACA
CTCATGGACCATCAGCACAGTAACTCCATGGACAACCTGGACAGTGAGTGCAGCGAGGTGTACCAGCCCC
TCACTTCCAGCGATGATGCTCTGGACGCCCCCTCCTCTTCAGAGTCAGAGGGCGTGCCAAGCATTGAGCG
CTCTCGGAAGGGGAGCAGTGGGAATGCCAGTGAGGTGTCCGTCGCTTGCCTGACAGAACGGATTCACCAG
ATGGAAGAGAACCAGCACAGCACCAGTGAGGAGCTTCAGGCCACTCTACAGGAGCTGGCTGATCTCCAGC
AGATTACCCAGGAGCTCAACAGTGAGAACGAAAGGCTGGGAGAGGAGAAGGTCATTCTGATGGAGTCGCT
GTGTCAGCAGAGTGATAAGTTGGAACACTTTGGCCGGCAGATTGAGTATTTCCGTTCCCTTCTTGATGAG
CATCACATTTCCTATGTCATAGATGAAGACGTAAAGAGCGGGCGCTATATGGAACTAGAGCAGCGCTACA
TGGATTTGGCTGAGAATGCCCGTTTTGAGCGAGAGCAGCTTCTAGGTGTGCAGCAGCATTTAAGCAACAC
TTTGAAGATGGCAGAACAAGATAACAAAGAAGCTCAAGAAATGATAGGTGCCCTCAAAGAGCGCAGCCAC
CACATGGAGCGGATTATTGAGTCTGAGCAGAAGGGCAAAGCGGCCCTGGCAGCCACATTGGAGGAGTACA
AAGCTACTGTGGCCAGTGACCAGATAGAGATGAATCGCTTGAAGGCCCAGCTGGAGAACGAAAAGCAGAA
GGTGGCTGAGTTGTATTCTATCCATAACTCTGGAGACAAGTCCGATATCCAGGATCTCCTGGAGAGTGTC
AGGCTGGACAAGGAAAAGGCGGAGACTTTGGCCAGTAGCCTGCAGGAAGATCTGGCTCATACCCGAAATG
ATGCCAATCGGTTACAGGACACCATTGCTAAGGTAGAAGATGAATACCGAGCTTTCCAGGAAGAGGCCAA
GAAGCAGATTGAAGATTTGAATATGACATTAGAAAAACTAAGATCAGAGTTGGAGGAAAAGGACACGGAG
AGGAGTGACATGAAGGAAACCATCTTTGAACTTGAAGATGAGGTGGAGCAGCACCGCGCCGTGAAGCTGC
ATGACAACCTCATTATCTCTGATCTAGAGAATACAGTTAAGAAACTCCAAGACCAAAAGCATGACATGGA
AAGAGAAATCAAGACACTTCACAGGAGACTTCGGGAAGAGTCTGCAGAATGGCGGCAATTTCAGGCTGAT
CTCCAGACTGCAGTGGTCATTGCCAATGATATCAAGTCTGAAGCCCAAGAAGAGATCGGTGATCTAAAGC
GACGGCTACATGAGGCCCAAGAGAAAAATGAGAAACTCACAAAAGAATTGGAGGAAATAAAGTCACGCAA
GCAAGAGGAAGAGCGTGGCCGGGTGTATAACTACATGAATGCTGTTGAAAGAGATTTGGCAGCCTTGAGG
CAAGGGATGGGACTGAGTAGAAGGTCCTCCACTTCCTCAGAACCAACTCCCACAGTAAAAACCCTCATCA
AGTCTTTCGACAGTGCATCTCAAGTACCAAACGCTGCTGCAGCTGCGATCCCTCGAACACCTCTGAGTCC
AAGTCCCATGAAAACCCCTCCTGCAGCTGCCGTTTCTCCCATGCAGAGACATTCCATAAGTGGTCCAATC
TCAACCTCCAAGCCTCTGACAGCCTTGTCAGATAAGAGATCAAACTATGGAGAGCTTCCTGTACAAGAGC
ATCTACTAAGAACATCTTCAACCAGCCGGCCCGCCTCTCTCCCAAGAGTCCCTGCTATGGAAAGTGCCAA
GACCATCTCAGTGTCTCGACGGAGTAGTGAAGAAATGAAACGGGACATCTCTGCATCTGAGGGCGCGTCA
CCAGCCTCTCTCATGGCTATGGGCACCACGTCACCACAGCTCTCCCTCTCTTCCTCTCCCACTGCATCTG
TCACTCCAAGCACCCGGAGCCGAATAAGGGAAGAAAGGAAAGACCCCCTCTCAGCATTGGCAAGAGAATA
TGGAGGCTCCAAGAGGAACGCCTTGTTGAAGTGGTGTCAGAAGAAAACAGAAGGCTATCAGAATATTGAC
ATCACAAACTTCAGCAGCAGCTGGAACGACGGGCTGGCTTTCTGCGCATTGCTTCATACCTATCTCCCAG
CCCACATACCATATCAAGAACTGAACAGTCAAGATAAGAAAAGGAACTTCACCCTGGCTTTCCAGGCAGC
TGAAAGTGTTGGAATCAAATCGACGCTGGACATCAATGAAATGGCGCGTACTGAACGGCCCGACTGGCAG
AACGTCATGCTGTATGTTACAGCCATCTACAAGTACTTTGAAACCTGA

Translation (1135 aa):
MLELRFGCKCITKRQPRMKKANRSAGSVPKVSGISKPQTVEKSKPENSSSAPTGVKPVRPGAAAALSKTK
SNDDLLAGMAGGVNVTNGIKAKKSTCSSAAPSAPAPAMTISENKSKISTGTSSSAKRSTSAGNKESSSTR
ERLRERTRLNQSKKLPSVSQGANDVALAKRSRSRTAAEGDIRMSKSKSDNQISDKAALEAKVKDLLTLAK
TKDVEILHLRNELRDMRAQLGISEDHCEGEDRSEVKETIIAHQPTDVESTLLQLQEQNTAIREELNQLKN
ENRMLKDRLNALGFSLEQRLDNSEKLFGYQSLSPEITPGNQSDGGGTLTSSVEGSAPGSVEDLLSQDENT
LMDHQHSNSMDNLDSECSEVYQPLTSSDDALDAPSSSESEGVPSIERSRKGSSGNASEVSVACLTERIHQ
MEENQHSTSEELQATLQELADLQQITQELNSENERLGEEKVILMESLCQQSDKLEHFGRQIEYFRSLLDE
HHISYVIDEDVKSGRYMELEQRYMDLAENARFEREQLLGVQQHLSNTLKMAEQDNKEAQEMIGALKERSH
HMERIIESEQKGKAALAATLEEYKATVASDQIEMNRLKAQLENEKQKVAELYSIHNSGDKSDIQDLLESV
RLDKEKAETLASSLQEDLAHTRNDANRLQDTIAKVEDEYRAFQEEAKKQIEDLNMTLEKLRSELEEKDTE
RSDMKETIFELEDEVEQHRAVKLHDNLIISDLENTVKKLQDQKHDMEREIKTLHRRLREESAEWRQFQAD
LQTAVVIANDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRKQEEERGRVYNYMNAVERDLAALR
QGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNAAAAAIPRTPLSPSPMKTPPAAAVSPMQRHSISGPI
STSKPLTALSDKRSNYGELPVQEHLLRTSSTSRPASLPRVPAMESAKTISVSRRSSEEMKRDISASEGAS
PASLMAMGTTSPQLSLSSSPTASVTPSTRSRIREERKDPLSALAREYGGSKRNALLKWCQKKTEGYQNID
ITNFSSSWNDGLAFCALLHTYLPAHIPYQELNSQDKKRNFTLAFQAAESVGIKSTLDINEMARTERPDWQ
NVMLYVTAIYKYFET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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