NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48713.1 Public Mus musculus 10 Os9 23 108 98 CCDS HistoryNCBI Gene:216440Re-query CCDS DB by CCDS ID:48713.1Re-query CCDS DB by GeneID:216440See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164259.8 ENSMUSP00000128914.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164259.8Link to Ensembl Protein Viewer:ENSMUSP00000128914.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164259Re-query CCDS DB by Protein ID:ENSMUSP00000128914
Original member Current member NCBI NM_001171026.1 NP_001164497.1 Accepted alive Link to Nucleotide Sequence:NM_001171026.1Link to Protein Sequence:NP_001164497.1Re-query CCDS DB by Nucleotide ID:NM_001171026Re-query CCDS DB by Protein ID:NP_001164497Link to BLAST:NP_001164497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164497.1 672 Q8K2C7-1 672 100% 0 0

Chromosomal Locations for CCDS 48713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127096247 127096372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127096630 127096742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127096915 127097079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127097932 127098121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127098341 127098637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127098831 127098916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127099403 127099457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127099613 127099707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127099890 127099991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127100085 127100295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127119099 127119197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127119403 127119479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127119604 127119667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127120369 127120545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127120957 127121118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGCGGCGGAGGTGCTGCTGTCCAGTCTGTTGGGATTGCTATTTCTAGGGCTCCTGTTACCTGCGCGTC
TGACGGGCGGTGTCGGGAGCCTGAATTTGGAGGAGCTGAGTGAGATGCGTTATGGCATCCAGATCTTGCC
GTTGCCTGTCATGGGAGGGCAGAGCCAAGCTTCAGACGTGGTGGTTGTGTCTTCAAAGTACAAACAGCGC
TATGAGTGCCGCCTACCAGCTGGAGCTATTCACTTCCAACGTGAAAGAGAGGAGGAGACGCCTGCTTACC
AGGGGCCCGGGATCCCTGAATTGTTGAGCCCAATGAGAGATGCCCCTTGTTTGCTGAAGACCAAGGACTG
GTGGACATATGAATTCTGTTATGGACGTCATATCCAGCAGTACCATATGGAAGACTCGGAGATCAAAGGT
GACGTCCTCTATCTTGGCCACTACCAGTCCTCCTTCAACTGGGACGACGAAACAGCCAAGGCTTCCAAGC
AGCATCGGCTGAAACGCTACCACAGCCAGACCTACGGCAACGGGTCCAAATGTGATCTCAACGGGAAGCC
CCGAGAAGCTGAAGTTCGGTTCCTGTGTGACGAGGGTGCGGGCATATCTGGGGACTACATTGACCGAGTA
GATGAACCCGTCTCCTGCTCCTACGTACTGACCATTCGCACGTCAAGGCTCTGCCCGCATCCTCTCCTCC
GGCCACCAGCCAGCGCTGCCCCACAGGCCATTCTTTGTCACCCAGCCCTGCAGCCTGATGAGTACATGGC
CTACCTCCAGAGGCAAGCTGAGTCAAAGCAGCATGAAGAGAAAACCACAGAGGAAGTCCAGGACACAGAC
CGCCAAGTGTGGAGTGGGAGCAAGGCTGCCGGAGCACCCCCAAAGAAAGAAGATGTCAGCCCAGCCAAGG
AAGAGAAGGAATCAGAGCTCTGGAAGCTTCAGGGGCCAGAGGAGCAGGCAGCAGCAAGAGAGGAGGCGCA
GGCAGGGGAACAGGACCTGAACCACGAGGCCGCAGCAGATCCAGCTCCAAGCCCTCCCAATGATTTTCAG
AATAACGTGCAGGTGAAACTCATCCGGAGTCCCGCAGACTTGATTCGACTGATTGAGGAGCTGAAAGCTG
CAGAAAAGGGGAAGCCAAGCGTAAGGCGGGAGCAGCCTGGAGACGATACCACGGAGGCCCCCCAGAGGGA
AGCAGAGGGAACGAAGGCGAAGGGAAAGGATGGTGAGCCCCCGGGTCTTATGGAAGAGGAGGATGGTGAC
GACGAAGAGGAGGAGGAGGAGGAGGAAGAGGACGAGGAGGAGCAGCAGCTCCTGGGAGAGTTCGAGAAGG
AGCTGGAGGGGATGTTGCTGCCCTCAAACCGCGAGCGCCTCCGCTCTGAGGTTAAGGCTGGCATGGAGCG
GGAGCTGGAGAACATCATCCAGGAGACAGAGAAGGAACTGGACCCAGAAGGGCTGAGGAAGGAGTCCGAG
CGGGAGCAGGCAATATTGGCTCTAACATCCACTCTGGACAAACTCATCAAGAGGCTGCAGGAGAACCAGA
GTCCAGAGCTTGTGCAAAAATACAAAAAAAGGAGAGTTGTCCCCCAAAAGCCTCCCCCATCACCACACCC
TACAGAGGAGGAACCTGAGCACAGAGTCCGGGTCCGAGTCACCAAGCTCCGTCCTGGAGGCCCCAATCGG
GACCTGACTGTCCTGGAGATGAACCGGGAAAACCCACAGCTGAAACAGATCGAGGGGCTGGTGACAGAAG
TGCTGGAGAGGGAGGGGCTCACGGCGGAAGGCAAGATTGAGATCAAGATTGTGCGACCCGGGGCTGAAGG
TAAGGAAGAGGACACACGCTGGCTGACTGATGAGGATACAAGAAACCTTAAGGAGATTTTCTTCAATATC
TTGGTACAGGGAGCCGAAGAGGCCAATAAAGAGCGCCAGCGACAGAGTGAGCTGGAGAGCAACTACCGCC
GGGTGTGGGGCTCTCCCGGTGGTGAAGACACGGGGGACCTGGATGAATTTGACTTCTGA

Translation (672 aa):
MAAEVLLSSLLGLLFLGLLLPARLTGGVGSLNLEELSEMRYGIQILPLPVMGGQSQASDVVVVSSKYKQR
YECRLPAGAIHFQREREEETPAYQGPGIPELLSPMRDAPCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKG
DVLYLGHYQSSFNWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGKPREAEVRFLCDEGAGISGDYIDRV
DEPVSCSYVLTIRTSRLCPHPLLRPPASAAPQAILCHPALQPDEYMAYLQRQAESKQHEEKTTEEVQDTD
RQVWSGSKAAGAPPKKEDVSPAKEEKESELWKLQGPEEQAAAREEAQAGEQDLNHEAAADPAPSPPNDFQ
NNVQVKLIRSPADLIRLIEELKAAEKGKPSVRREQPGDDTTEAPQREAEGTKAKGKDGEPPGLMEEEDGD
DEEEEEEEEEDEEEQQLLGEFEKELEGMLLPSNRERLRSEVKAGMERELENIIQETEKELDPEGLRKESE
REQAILALTSTLDKLIKRLQENQSPELVQKYKKRRVVPQKPPPSPHPTEEEPEHRVRVRVTKLRPGGPNR
DLTVLEMNRENPQLKQIEGLVTEVLEREGLTAEGKIEIKIVRPGAEGKEEDTRWLTDEDTRNLKEIFFNI
LVQGAEEANKERQRQSELESNYRRVWGSPGGEDTGDLDEFDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH