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Report for CCDS48714.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48714.2 Reviewed, update pending Mus musculus 10 Slc26a10 23 108 98 CCDS HistoryNCBI Gene:216441Re-query CCDS DB by CCDS ID:48714.2Re-query CCDS DB by GeneID:216441See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48714.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222911.1 ENSMUSP00000152871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222911.1Link to Ensembl Protein Viewer:ENSMUSP00000152871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222911Re-query CCDS DB by Protein ID:ENSMUSP00000152871
Original member Current member NCBI NM_177615.4 NP_808283.3 Pending alive Link to Nucleotide Sequence:NM_177615.4Link to Protein Sequence:NP_808283.3Re-query CCDS DB by Nucleotide ID:NM_177615Re-query CCDS DB by Protein ID:NP_808283Link to BLAST:NP_808283.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808283.3 676 Q5EBI0 676 100% 0 0

Chromosomal Locations for CCDS 48714.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127172538 127172576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127173275 127173381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127173482 127173536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127173624 127173706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127173805 127173808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127173909 127174025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127174099 127174168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127174284 127174390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127174806 127174901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127174985 127175062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127176572 127176685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127176807 127176954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127177087 127177169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127177938 127178090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127178343 127178507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127178729 127178886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127179625 127179735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127180231 127180573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGAGTGGGCCACTTGCCTCTGGGACCTGCTCAGATCCGGAAGAGGTTTCTGACCTTAAGTCTCCGCTGA
GCTCAAGGTTCAGAGAACCTCTCACCCACGCTCGGTTCCAGGAGCTCTTCGGGGGCGCAGAGCCGGAGCC
GGAGCTGCCAGCGGAGCCCTGCCTACCCTGCTTGTGCAGGCTGCGGAGGAGGCGAGCCAGCGCCTGTTCT
GGGCCGGGGGCGTGGCGCGTGCTGCTGGCACGGCTGCCCCCGCTGCGTTGGCTGCCCCAATACCGCTGGC
GAGCCTGGCTGCTCGGAGATGCTGTGGCTGGAGTAACCGTGGGCGTTGTGCACGTGCCCCAGGGCATGGC
TTTTGCCCTCCTGACCTCGGTGCCCCCGGTGTTCGGACTCTACACGTCTTTCTTTCCTGTTCTCATCTAC
AGTTTACTGGGCACTGGGAGACACCTGTCCACTGGAACTTTCGCAGTACTCAGTCTAATGACCGGTTCTG
TAGTCGAGAGGGTGGTGCCCGAACCCCTCGCGGGGAACCTCAGTGGAATCGAAAGGGAGCAACTGGAAGC
TCGGAGAGTTGGGGCGGCAGCCGCTGTGGCCTTCGGGAGTGGGGCGCTAATGCTGGGGATGTTCGTGCTG
CAGCTTGGTGTCCTGTCCACCTTTCTATCGGAGCCTGTGATCAAGGCGCTGACCAGCGGGGCCGCGCTGC
ACGTGCTGGTGTCCCAGCTGCCAAGCCTCTTGGGATTGTCTCTCCCACGCCAGATCGGCTGCTTTTCTCT
CTTCAAGACGCTGGCCGCGGTGCTCAGCGCCCTGTCCCAGAGCAGTCCTGCAGAAGTGACCATCTCGGCG
CTCAGCCTGGTGTTGCTAGTGCCAGTCAAGGAACTAAACGTGCGATTCCGGGACAGGCTACTTACTCCAA
TCCCAGGAGAAGTTGTCATGGTGCTTCTGGCTACGGTGCTCTGCTTCACCTCTTCCCTGGACACAAGATA
CAATGTCCAGGTAGTGGGACCATTGCCTGGAGGATTTCCCCAACCCCTCCTCCCCACCCTGGATGAGCTG
CCCAGGATACTGGCCGACTCCCTGCCTATCTCGTTGGTGACTTTTGCTGTGTCCACCTCTCTGGCCTCCA
TCTATGCAGACAAGTACAGCTACACTATTGAGCCCAATCAGGAACTCCTGGCCCACGGTGTCTCCAACCT
CATTTCTTCTCTCTTCTCTTGCTTTCCCAACTCGGCCACACTGGCTACAACCAGCTTATTAGTGGATGCT
GGTGGGAATACACAGCTGGCAGGCCTCTTCTCCTGCGCAGTGGTCCTGGCAGCGCTGCTGTGGCTGAGGC
CCTTCTTCTACTACCTGCCCAAGGCTGTCCTGGCTTGCATCAATATCTCCAGCATGCGCCAGATGTTCTT
CCAGATGCAAGAACTTCCGCAGCTCTGGCACATCAGCCATGTGGACTTTGCTGTGTGGATAGTCACGTGG
GTGGCTGTCGTGACCCTGAATGTGGACCTGGGCCTGGCTGTGGGTGTGGTCGTCTCCATGATGACAGTGG
TCTGCAGAACTCAGAGGGTGCAGTGCCTGGAGCTTGGATTGGCTGAGGGGACGGAGCTCTACAGGCCAAT
CAGAGAGAGCCGTAAGCTCCTCCAAGTTCCAGGTCTTTGTATCCTGAGTTATCCAGCACCCCTCTACTTT
GCAACCCGTGGGCAGTTCCACCGAATCTTGGAGTGGCATCTGGGGCTTGGAGAAAGAATCAAGCCAGGTG
CTGAGCCTGTCAGAGTGGCGATCCTAGACTTCAGTGGTATCACTTTTGTAGATGCTGCAGGGGCCCGGGA
AGTGGTCCAGCTCACCAGGCGGTGCCAGGACGATGGGATCTACCTTCTCTTGGCTCAGTGTAATGCCTTG
GTGCTCGAGACCTTGACCCGGGCGAGACTCCTGGATAGCGTGTCTCCAGAACAACTCTTTGTGAGTGTCC
AGGATGCTGCTGCACATGCACTGGAGAGGCTGAAACCTACTGGCCCAAAGATTTGCACGGTGTGGGTCTG
A

Translation (676 aa):
MSGPLASGTCSDPEEVSDLKSPLSSRFREPLTHARFQELFGGAEPEPELPAEPCLPCLCRLRRRRASACS
GPGAWRVLLARLPPLRWLPQYRWRAWLLGDAVAGVTVGVVHVPQGMAFALLTSVPPVFGLYTSFFPVLIY
SLLGTGRHLSTGTFAVLSLMTGSVVERVVPEPLAGNLSGIEREQLEARRVGAAAAVAFGSGALMLGMFVL
QLGVLSTFLSEPVIKALTSGAALHVLVSQLPSLLGLSLPRQIGCFSLFKTLAAVLSALSQSSPAEVTISA
LSLVLLVPVKELNVRFRDRLLTPIPGEVVMVLLATVLCFTSSLDTRYNVQVVGPLPGGFPQPLLPTLDEL
PRILADSLPISLVTFAVSTSLASIYADKYSYTIEPNQELLAHGVSNLISSLFSCFPNSATLATTSLLVDA
GGNTQLAGLFSCAVVLAALLWLRPFFYYLPKAVLACINISSMRQMFFQMQELPQLWHISHVDFAVWIVTW
VAVVTLNVDLGLAVGVVVSMMTVVCRTQRVQCLELGLAEGTELYRPIRESRKLLQVPGLCILSYPAPLYF
ATRGQFHRILEWHLGLGERIKPGAEPVRVAILDFSGITFVDAAGAREVVQLTRRCQDDGIYLLLAQCNAL
VLETLTRARLLDSVSPEQLFVSVQDAAAHALERLKPTGPKICTVWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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