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Report for CCDS48824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48824.1 Public Mus musculus 11 Ctc1 23 108 98 CCDS HistoryNCBI Gene:68964Re-query CCDS DB by CCDS ID:48824.1Re-query CCDS DB by GeneID:68964See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021278.13 ENSMUSP00000021278.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021278.13Link to Ensembl Protein Viewer:ENSMUSP00000021278.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021278Re-query CCDS DB by Protein ID:ENSMUSP00000021278
Original member Current member NCBI NM_001143790.1 NP_001137262.1 Accepted alive Link to Nucleotide Sequence:NM_001143790.1Link to Protein Sequence:NP_001137262.1Re-query CCDS DB by Nucleotide ID:NM_001143790Re-query CCDS DB by Protein ID:NP_001137262Link to BLAST:NP_001137262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137262.1 1211 Q5SUQ9-2 1211 100% 0 0

Chromosomal Locations for CCDS 48824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69016133 69016165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69021030 69021193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69022377 69022614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69022709 69022920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69024162 69024306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69026074 69026352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69026451 69026579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69027254 69027486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69027604 69027781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69027864 69028064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69029686 69029812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69030484 69030598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69030691 69031006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69031100 69031189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69031414 69031604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69033183 69033271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69033367 69033541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69033959 69034036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69034635 69034779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69034884 69034948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69035505 69035670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69035767 69035893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69036028 69036167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3636 nt):
ATGGCTGCTTGCCGAGCACAACCACCTACCTCCGAGCAAGCCTGGCTTGAGGCTGCCCAGACCTTCATCC
AAGAGACCCTCTGTCCAGCTGGCAAGGAGGTGGACAAAGAGTTGACTCGGTCAGTAATTGCTTGTGTGAA
GGAGACGTGGCTGTCCCAGGGGGAGAACCAGGATTTAACTCTGCCCTTCAGCTACAGCTTTGTCTCGGTA
CAGAGTCTGAAGACCCATCAGCGCCTCCCATGCTGCAGCCACCTGTCCTGGAGTCAGAGTGCTTACCAGG
CGTGGACCCGCGGAGGCCGGCCGGGGGACGGCGTCCTGCCCCGGGAGCAGCTGATACTTTTAGGGACACT
AGTAGACCTATTGGGAGATTCGGAACAAGAATGTAGGAGTGGAAGCCTGTATGTGAGGGATAACACTGGG
ACCTTGGACTGTGAGCTCATTGATCTAGACCTTTCTTGGTTGGGCCATCTCTTCCTATTCCCCAGTTGGA
GTTACCTTCCTTCTGCCAAGAGGAATTCCTTGGGGGAAGGGCACTTGGAACTATGGGGTACACCGGTGCC
AGTATTTCCTTTGACTGTCAGTCCTGGCCCTCTCATACCTATCCCTGTCCTCTACCCAGAAAAGGCGTCC
CACCTGCTCAGATACAGAAAGAAATCCAGTATAAAGGAGATAAACCTCGCTGGAAAACTGGTCCATCTGA
GTGCCCTGATAATAACTCAGAACAAAAGGTATTTCATCATGACACTTGGTGAATTAGCCCAAGCTGGCAG
CCAGGTGTCCATCATTGTACAGATCCCTGCTCAGATGGTGTGGCACCGAGTCCTCCGGCCTGGCAGGGCC
TATGTACTGACAAAATTGCAAGTAACCAAGACCCGGATTCACCTTTCCTGTATTTGGACAACCATTCCAT
CTTCAACTCTGAAGCCTCTGAGACCAGGTTATGTGCAAGAGCTGGAGCTGGACTTAGAGTTCTCGAAAGC
TGACCTTAAACCACCACCCCAGCCCACCAGCTCCAAAGACAGCAGAGGGCAAGAAGGTCTTGTCCGGGCT
TCCAAAGTCTTGCATTATTTGGGAACAGTCACTGCTGTGTTGCATGAGTCTGCCGGCCTCTACATTCTAG
ATGGGCAGCTGATTCTCTGCCTCGCATACCAGAAGATCCATGGCCTCAGGCGGGTTATTCGACCAGGGGT
CTGTCTGGAGCTCCGAGATGTTCATCTCCTCCAGGCAGTGGGTGGAGCAACAACAAAACCTGTCCTGGCG
CTCTGTCTCCATGGCACTGTTCGGCTTCAAGGCTTTTCTTGTCTTAAGCCTCTGACTTTGCCGTCCTCCA
AAGTTTATGGTGCCTCCTTGTATGAGCAACTCGTGTGGAAATGTCAGTTAGGACTTCCCTTATACTTATG
GGCTGCCAAGACCCTGGAGGATCTCATCTACAAGCTGTGTCCCCATGTGTTGAGATGTCACCAGTTCCTG
AAGCAACCCTCTCCTGGGAAGCCCAGCTTGGGCCTGCAGCTCCTGGCTCCCTCCTGGGATGTTCTGATTC
CACCTGGCAGCCCCATGCGGCATGCGTACAGCGAGATCCTGGAAGAACCACACAACTGCCCCCTTCAGAA
ATACACTCCACTGCAGACTCCCTACTCTTTCCCTACTATGCTCGCCCTGGCAGAGGAAGGGCAGCACAGG
GCTTGGGCTACTTTTGACCCAAAGGCCATGCTGCCTCTCCCAGAAGCCAGTCACCTGACCAGCTGCCAAC
TGAATCGCCACCTAGCCTGGTCCTGGGTCTGTCTGCCATCCTGTGTGTTCCAGCCAGCCCAGGTTTTACT
TGGGGTCCTGGTGGCTTCATCTCGTAAAGGTTGTCTGGAGCTTCGGGATCTAAGAGGTTCACTGCCTTGT
ATCCCCTTGACTGAGAGTTCACAGCCCCTCATTGACCCGAATCTCGTAGGCTGCCTGGTGCGGGTAGAGA
AGTTCCAGTTGGTAGTAGAGAGAGAAGTCAGGAGCAGCTTCCCTTCCTGGGAGGAGATGGGCATGGCACG
CTTCATCCAGAAGAAGCAGGCCAGAGTCTACGTCCAGTTCTACCTGGCTGATGCCCTGATCCTGCCCGTG
CCCAGACCCACCTTTGGTTCAGAACCATCTCAGACAGCCTCCTCCTGCCCAGAGGGACCCCACCTGGGAC
AGAGCCGGCTGTTCTTACTGTCCCACAAGGAGGCCCTCATGAAACGTAATTTTTGTCTCCTTCCGGGAGA
CAGTTCACAACCTGCAAAGCCCACCTTGAGTTTCCACGTGTCAGGAACTTGGCTTTGTGGCACACAGAGG
AAGGAAGGTTCTGGATGGAGCCCACCCGAGTCTCTGGCCGTTGAGAGCAAGGATCAGAAGGTCTTCCTCA
TCTTTCTTGGCTCTTCAGTTCGATGGTTTCCGTTCTTGTACCCAAACCAAGTCTACCGACTCGTGGCTTC
CGGCCCCTCAACACCAGTGTTCGAGACAGAGGGCTCAGCTGGCACCTCTCGACGTCCTCTGGAACTGGCT
GACTGTGGATCTTGCCTCACTGTCCAAGAGGAGTGGACCCTGGAGCTTGGGAGCTCTCAGGACATACCTA
ATGTACTGGAGGTCCCTAGAACACTGCCCGAGTCCTCACTGGCCCAGCTGCTCGGTGACAACTCCCCCGA
TTCCTTGGTATCTTTCTCTGCTGAGATTTTGTCTCGGATACTGTGTGAACCACCTCTGGCCCTTCGCCGG
ATGAAACCTGGGAATGCTGGGGCTATTAAAACAGGTGTGAAGCTAACAGTAGCTCTAGAAATGGATGACT
GTGAATATCCCCCTCACCTGGACATATATATCGAAGATCCACAGTTGCCTCCCCAAATAGGACTCCTTCC
AGGAGCCCGAGTCCACTTTAGCCAGCTGGAGAAAAGGATTTCCAGATCCAACATTGTTTACTGTTGTTTC
CGGTCATCCACTTCTGTGCAGGTCCTGAGCTTCCCCCCAGAGACCAAAGCCAGTGCTCCTCTGCCCCACA
TCTATCTGGCTGAACTTCTCCAAGGTGACCGGCCTCCCTTCCAGGCCACTACCTCTTGCCATATTGTGTA
TGTCCTGAGCCTTCAGATCCTGTGGGTGTGTGCTCATTGCACCAGCATCTGCCCCCAGGGTAAGTGTAGT
CGCCGGGACCCCAGTTGTCCATCTCAGAGGGCTGTAAGCCAGGCCAACATCAGGCTCCTGGTAGAAGATG
GCACCGCAGAAGCGACGGTGATCTGTAGGAATCATCTTGTGGCAAGGGCACTAGGGCTGAGTCCTAGTGA
GTGGTCCTCCATCCTCGAGCATGCCAGGGGGCCGGGGAGAGTGGCCTTGCAGTTTACAGGGCTAGGAGGC
CAAACAGAGTCTGCAAGCAAAACCCATGAGCCCTTGACCCTGCTCCTCCGGACACTTTGTACCAGCCCCT
TTGTCCTCCGACCCGTTAAGCTTTCTTTTGCACTTGAAAGGAGACCCACTGATATTTCCCCACGAGAACC
GTCCCGGCTGCAGCAGTTCCAGTGTGGAGAGCTCCCTCTGCTGACCAGAGTGAATCCCAGGCTCCGACTG
GTCTGCCTTTCTCTGCAGGAGCCGGAGCTCCCCAACCCTCCACAAGCATCTGCTGCTTCGTCTTGA

Translation (1211 aa):
MAACRAQPPTSEQAWLEAAQTFIQETLCPAGKEVDKELTRSVIACVKETWLSQGENQDLTLPFSYSFVSV
QSLKTHQRLPCCSHLSWSQSAYQAWTRGGRPGDGVLPREQLILLGTLVDLLGDSEQECRSGSLYVRDNTG
TLDCELIDLDLSWLGHLFLFPSWSYLPSAKRNSLGEGHLELWGTPVPVFPLTVSPGPLIPIPVLYPEKAS
HLLRYRKKSSIKEINLAGKLVHLSALIITQNKRYFIMTLGELAQAGSQVSIIVQIPAQMVWHRVLRPGRA
YVLTKLQVTKTRIHLSCIWTTIPSSTLKPLRPGYVQELELDLEFSKADLKPPPQPTSSKDSRGQEGLVRA
SKVLHYLGTVTAVLHESAGLYILDGQLILCLAYQKIHGLRRVIRPGVCLELRDVHLLQAVGGATTKPVLA
LCLHGTVRLQGFSCLKPLTLPSSKVYGASLYEQLVWKCQLGLPLYLWAAKTLEDLIYKLCPHVLRCHQFL
KQPSPGKPSLGLQLLAPSWDVLIPPGSPMRHAYSEILEEPHNCPLQKYTPLQTPYSFPTMLALAEEGQHR
AWATFDPKAMLPLPEASHLTSCQLNRHLAWSWVCLPSCVFQPAQVLLGVLVASSRKGCLELRDLRGSLPC
IPLTESSQPLIDPNLVGCLVRVEKFQLVVEREVRSSFPSWEEMGMARFIQKKQARVYVQFYLADALILPV
PRPTFGSEPSQTASSCPEGPHLGQSRLFLLSHKEALMKRNFCLLPGDSSQPAKPTLSFHVSGTWLCGTQR
KEGSGWSPPESLAVESKDQKVFLIFLGSSVRWFPFLYPNQVYRLVASGPSTPVFETEGSAGTSRRPLELA
DCGSCLTVQEEWTLELGSSQDIPNVLEVPRTLPESSLAQLLGDNSPDSLVSFSAEILSRILCEPPLALRR
MKPGNAGAIKTGVKLTVALEMDDCEYPPHLDIYIEDPQLPPQIGLLPGARVHFSQLEKRISRSNIVYCCF
RSSTSVQVLSFPPETKASAPLPHIYLAELLQGDRPPFQATTSCHIVYVLSLQILWVCAHCTSICPQGKCS
RRDPSCPSQRAVSQANIRLLVEDGTAEATVICRNHLVARALGLSPSEWSSILEHARGPGRVALQFTGLGG
QTESASKTHEPLTLLLRTLCTSPFVLRPVKLSFALERRPTDISPREPSRLQQFQCGELPLLTRVNPRLRL
VCLSLQEPELPNPPQASAASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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