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Report for CCDS4883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4883.1 Public Homo sapiens 6 KLC4 24 110 108 CCDS HistoryNCBI Gene:89953Re-query CCDS DB by CCDS ID:4883.1Re-query CCDS DB by GeneID:89953See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347162.10 ENSP00000340221.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347162.10Link to Ensembl Protein Viewer:ENSP00000340221.5Re-query CCDS DB by Nucleotide ID:ENST00000347162Re-query CCDS DB by Protein ID:ENSP00000340221
Original member Current member EBI ENST00000394056.6 ENSP00000377620.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394056.6Link to Ensembl Protein Viewer:ENSP00000377620.2Re-query CCDS DB by Nucleotide ID:ENST00000394056Re-query CCDS DB by Protein ID:ENSP00000377620
Original member Current member EBI ENST00000479388.5 ENSP00000418031.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479388.5Link to Ensembl Protein Viewer:ENSP00000418031.1Re-query CCDS DB by Nucleotide ID:ENST00000479388Re-query CCDS DB by Protein ID:ENSP00000418031
Original member Current member NCBI NM_001289034.2 NP_001275963.1 Accepted alive Link to Nucleotide Sequence:NM_001289034.2Link to Protein Sequence:NP_001275963.1Re-query CCDS DB by Nucleotide ID:NM_001289034Re-query CCDS DB by Protein ID:NP_001275963Link to BLAST:NP_001275963.1
Original member Current member NCBI NM_201521.3 NP_958929.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201521.3Link to Protein Sequence:NP_958929.1Re-query CCDS DB by Nucleotide ID:NM_201521Re-query CCDS DB by Protein ID:NP_958929Link to BLAST:NP_958929.1
Original member Current member NCBI NM_201522.3 NP_958930.1 Accepted alive Link to Nucleotide Sequence:NM_201522.3Link to Protein Sequence:NP_958930.1Re-query CCDS DB by Nucleotide ID:NM_201522Re-query CCDS DB by Protein ID:NP_958930Link to BLAST:NP_958930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275963.1 619 Q9NSK0-1 619 100% 0 0
NP_958929.1 619 Q9NSK0-1 619 100% 0 0
NP_958930.1 619 Q9NSK0-1 619 100% 0 0

Chromosomal Locations for CCDS 4883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43061336 43061593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43062917 43063147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43065620 43065701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43066306 43066525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43066996 43067083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43070354 43070455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43070692 43070865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43071275 43071374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43071567 43071619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43071852 43071922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43072147 43072255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43072824 43072964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43073223 43073338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43073902 43073965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43074622 43074672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGTCAGGCCTGGTGTTGGGGCAGCGGGATGAGCCTGCAGGCCACCGGCTCAGCCAAGAGGAGATCCTGG
GGAGCACACGGCTGGTCAGCCAAGGGCTAGAGGCCCTACGCAGTGAACACCAGGCCGTGCTGCAAAGCCT
GTCCCAGACCATTGAGTGTCTGCAGCAGGGAGGCCATGAGGAAGGGCTGGTGCATGAGAAGGCCCGGCAG
CTTCGCCGTTCTATGGAAAACATTGAGCTCGGGCTGAGTGAGGCCCAGGTGATGCTGGCTCTAGCCAGCC
ACCTGAGCACAGTGGAGTCGGAGAAACAGAAGCTGCGGGCTCAGGTGCGGCGGCTATGCCAGGAGAACCA
GTGGCTGCGGGATGAGCTGGCTGGCACCCAGCAGCGGCTACAGCGCAGTGAACAGGCTGTGGCTCAGCTG
GAGGAGGAAAAGAAGCACCTGGAGTTCCTGGGGCAGCTGCGGCAGTATGATGAGGATGGACATACCTCGG
AGGAGAAAGAAGGCGATGCCACCAAGGATTCCCTGGATGACCTCTTTCCTAATGAGGAGGAAGAGGACCC
CAGCAATGGCTTGTCCCGTGGTCAAGGTGCTACAGCAGCTCAGCAGGGTGGATATGAGATCCCAGCAAGG
TTGCGGACGTTGCACAACCTGGTGATCCAGTACGCAGCCCAAGGTCGCTATGAGGTGGCCGTGCCACTCT
GTAAGCAGGCACTAGAGGACCTGGAGCGCACATCAGGCCGTGGCCACCCTGATGTCGCCACCATGCTCAA
CATCCTTGCTTTGGTGTATCGTGACCAGAATAAGTATAAGGAAGCTGCCCACCTGCTGAATGATGCCCTT
AGCATCCGGGAGAGCACCTTGGGACCTGACCATCCTGCTGTGGCTGCCACACTCAACAATTTGGCTGTGC
TCTATGGCAAAAGGGGCAAGTACAAGGAGGCAGAGCCTCTGTGCCAGCGGGCACTGGAGATTCGAGAAAA
GGTCCTGGGCACGAATCATCCAGATGTGGCAAAACAGCTGAACAACCTGGCCCTCTTGTGCCAAAACCAG
GGCAAGTATGAGGCCGTGGAACGCTACTACCAGCGAGCACTGGCCATCTACGAGGGGCAGCTGGGGCCGG
ACAACCCTAATGTAGCCCGGACCAAGAACAACCTGGCTTCCTGTTACCTGAAACAGGGCAAATATGCTGA
GGCTGAGACACTATACAAAGAGATCCTGACCCGTGCCCATGTACAGGAGTTTGGGTCTGTGGATGATGAC
CACAAGCCCATCTGGATGCATGCAGAGGAGCGGGAGGAAATGAGCAAAAGCCGGCACCATGAGGGTGGGA
CACCCTATGCTGAGTATGGAGGCTGGTACAAGGCCTGCAAAGTGAGCAGCCCCACAGTGAACACTACTCT
GAGAAACCTGGGAGCTCTGTATAGGCGCCAGGGAAAGCTGGAGGCTGCTGAGACCCTGGAGGAATGTGCC
CTGCGGTCCCGGAGACAGGGCACTGACCCTATCAGCCAGACGAAGGTGGCAGAGCTGCTTGGGGAGAGTG
ATGGTAGAAGGACCTCCCAGGAGGGCCCTGGAGACAGTGTGAAATTCGAGGGAGGTGAAGATGCTTCTGT
GGCTGTGGAGTGGTCCGGGGATGGCAGTGGGACCCTGCAGAGGAGTGGCTCTCTTGGCAAGATCCGGGAT
GTGCTCCGCAGAAGCAGTGAACTCTTGGTGAGGAAGCTCCAGGGGACTGAGCCTCGGCCCTCCAGCAGCA
ACATGAAGCGAGCAGCCTCCTTGAACTATCTGAACCAACCTAGTGCAGCACCCCTCCAGGTCTCCCGGGG
CCTCAGTGCCAGCACCATGGACCTCTCTTCAAGCAGCTGA

Translation (619 aa):
MSGLVLGQRDEPAGHRLSQEEILGSTRLVSQGLEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQ
LRRSMENIELGLSEAQVMLALASHLSTVESEKQKLRAQVRRLCQENQWLRDELAGTQQRLQRSEQAVAQL
EEEKKHLEFLGQLRQYDEDGHTSEEKEGDATKDSLDDLFPNEEEEDPSNGLSRGQGATAAQQGGYEIPAR
LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL
SIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQ
GKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHVQEFGSVDDD
HKPIWMHAEEREEMSKSRHHEGGTPYAEYGGWYKACKVSSPTVNTTLRNLGALYRRQGKLEAAETLEECA
LRSRRQGTDPISQTKVAELLGESDGRRTSQEGPGDSVKFEGGEDASVAVEWSGDGSGTLQRSGSLGKIRD
VLRRSSELLVRKLQGTEPRPSSSNMKRAASLNYLNQPSAAPLQVSRGLSASTMDLSSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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