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Report for CCDS48846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48846.1 Public Mus musculus 11 Or3a1d 23 108 98 CCDS HistoryNCBI Gene:258704Re-query CCDS DB by CCDS ID:48846.1Re-query CCDS DB by GeneID:258704See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080365.5 ENSMUSP00000079235.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080365.5Link to Ensembl Protein Viewer:ENSMUSP00000079235.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080365Re-query CCDS DB by Protein ID:ENSMUSP00000079235
Original member Current member EBI ENSMUST00000214769.1 ENSMUSP00000149978.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214769.1Link to Ensembl Protein Viewer:ENSMUSP00000149978.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214769Re-query CCDS DB by Protein ID:ENSMUSP00000149978
Original member Current member NCBI NM_146709.2 NP_666920.2 Accepted alive Link to Nucleotide Sequence:NM_146709.2Link to Protein Sequence:NP_666920.2Re-query CCDS DB by Nucleotide ID:NM_146709Re-query CCDS DB by Protein ID:NP_666920Link to BLAST:NP_666920.2

Chromosomal Locations for CCDS 48846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74346635 74347582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGAGTCCAAGTTTGAGAGCAATGGAACAGCAGTTACAGAGTTCATTCTTCTGGGCTTGGTAGAGACAG
CAGGGCTGCAGCCAGTCATCTTTGTAGTCTTCCTCTTCGCCTACTTGCTCACAGTTGGGGGCAACCTAAG
CATCCTGGCAGCTGTATTTGTGGAACCCAAACTCCACACCCCCATGTACTTCTTTCTGGGGAATCTGTCC
ATGTTGGATGTCGGCTGCATCAGTGTCACTGTCCCATCAATGTTGGGTCGTCTCTTGTCCCACAAGCGCA
CAGTTCCCTATGGAGCCTGCCTCACACAGCTCTTCTTCTTTCATCAGCTGGCTGGAGTTGACTGCTTCCT
ATTGACAGCCATGGCTTATGACCGATTCCTGGCCATCTGCCGGCCCCTCACTTACAGCACCCGAATGAAC
CACACCGTCCAGAGGATCTTGGTGGCCACGTCCTGGGCTTGTGCCTTCAGCAATGCACTGACCCACACTG
TGGCCATATCCACACTTAACTTCTGCGGCCCCAATGTGATCAATCACTTCTATTGTGACCTGCCTCAGCT
CTTCCAGCTGTCCTGCTCCAGTACCCAGCTCAATGAGCTGCTGCTCTTTGGTCTGGGTGTCCTCATGGCT
GGTGCACCTGTGATTCTCATTGTCACCTCTTACATCCATGTGGCAGCTGCAGTTTTGAGAATCCAATCTT
CAGAGGGCAGGAAGAAAGCCTTCTCCACCTGCAGCTCTCACCTCACTGTGGTAGGCATCTTCTATGGGAC
AGGGGTCTTCAGCTACATGCGGCTGGGGTCAGTGGAGGCTTCAGACAAGGACAAGGGCATTGGCATCCTC
AACACTGTCATCAGTCCCATGCTGAACCCACTTATCTACAGCCTTAGGAACCCTGATGTGCAGGGTGCCC
TGAGGAGGGTACTCACAGGAAAGCGAGACTTGGCATGA

Translation (315 aa):
MESKFESNGTAVTEFILLGLVETAGLQPVIFVVFLFAYLLTVGGNLSILAAVFVEPKLHTPMYFFLGNLS
MLDVGCISVTVPSMLGRLLSHKRTVPYGACLTQLFFFHQLAGVDCFLLTAMAYDRFLAICRPLTYSTRMN
HTVQRILVATSWACAFSNALTHTVAISTLNFCGPNVINHFYCDLPQLFQLSCSSTQLNELLLFGLGVLMA
GAPVILIVTSYIHVAAAVLRIQSSEGRKKAFSTCSSHLTVVGIFYGTGVFSYMRLGSVEASDKDKGIGIL
NTVISPMLNPLIYSLRNPDVQGALRRVLTGKRDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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