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Report for CCDS48865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48865.1 Public Mus musculus 11 Zfp207 23 108 98 CCDS HistoryNCBI Gene:22680Re-query CCDS DB by CCDS ID:48865.1Re-query CCDS DB by GeneID:22680See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48865.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165565.7 ENSMUSP00000132968.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165565.7Link to Ensembl Protein Viewer:ENSMUSP00000132968.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165565Re-query CCDS DB by Protein ID:ENSMUSP00000132968
Original member Current member NCBI NM_001130170.1 NP_001123642.1 Accepted alive Link to Nucleotide Sequence:NM_001130170.1Link to Protein Sequence:NP_001123642.1Re-query CCDS DB by Nucleotide ID:NM_001130170Re-query CCDS DB by Protein ID:NP_001123642Link to BLAST:NP_001123642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123642.1 479 Q9JMD0-2 479 100% 0 0

Chromosomal Locations for CCDS 48865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80383455 80383495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80385903 80386029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80387802 80387940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80388978 80389145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80389255 80389330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80391331 80391401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80391835 80391992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80393084 80393176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80394286 80394531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80395102 80395261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80395390 80395550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGGTCGCAAGAAGAAGAAGCAGCTCAAGCCGTGGTGCTGGTATTGTAACAGAGATTTTGATGATGAGA
AG
ATCCTTATACAGCACCAAAAAGCAAAGCATTTTAAATGCCATATTTGTCATAAGAAATTATACACAGG
A
CCTGGTTTAGCAATTCATTGCATGCAGGTCCATAAAGAAACCATAGATGCAGTACCAAATGCAATACCT
GGG
AGAACAGACATAGAGTTGGAAATATATGGCATGGAAGGTATTCCAGAGAAAGATATGGATGAAAGAC
GG
CGACTTCTTGAACAGAAAACACAAGAGAGTCAGAAAAAGAAACAACAAGATGATTCTGATGAATATGA
T
GATGATGAATCTGCAGCCTCAACTTCCTTTCAGCCACAGCCTGTTCAACCTCAGCAAGGTTATATCCCA
CCA
ATGGCTCAGCCAGGACTGCCTCCAGTTCCAGGGGCACCAGGAATGCCTCCAGGCATACCTCCATTGA
TG
CCAGGTGTTCCTCCCCTGATGCCAGGCATGCCTCCAGTGATGCCAGGAATGCCGCCTGGAATGATGCC
A
ATGGGTGGAATGATGCCACCTGGACCTGGAATACCACCTCTGATGCCAGGTATGCCACCAGGTATGCCC
CCA
CCTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAGGCTGTTTCAGCACCAGGTATTCTTA
AT
AGACCACCTGCACCAACAGCAGCAGTACCTGCTCCACAGCCTCCAGTTACTAAGCCTCTTTTCCCCAG
T
GCTGGACAGATGGGGACACCTGTAACAAGCTCAAGTACAGCTTCATCCAATTCAGAAAGTCTGTCTGCA
TCT
TCTAAAGCTCTGTTTCCTAGCACAGCACAAGCTCAGGCAGCTGTCCAAGGACCTGTTGGTACAGATT
TT
AAGCCCTTAAATAGTACTCCTGCAGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGCTTATAC
A
CAGTCTACAGCGTCAACCACTAGTACAACAAACAGTACTGCAGCAAAGCCAGCAGCTTCAATAACAAGT
AAG
CCTGCTACACTCACAACCACCAGTGCAACCAGTAAGTTGATCCATCCAGATGAGGATATATCACTGG
AA
GAAAGAAGGGCACAGTTACCTAAATATCAGAGAAATCTTCCTCGACCAGGACAAACTCCAATTGGTAA
T
CCACCAGTTGGACCAATTGGGGGTATGATGCCACCACAGCCAGGCCTGCCACAGCAGCAGGCAATGCGA
CCT
CCAATGCCACCTCATGGTCAGTATGGTGGTCATCATCAAGGCATGCCAGGTTATCTTCCTGGCGCTA
TG
CCACCGTATGGACAGGGACCACCAATGGTGCCCCCTTACCAAGGTGGGCCTCCTCGACCTCCAATGGG
A
ATGAGACCTCCTGTAATGTCGCAAGGTGGCCGTTACTGA


Translation (479 aa):
MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIP
G
RTDIELEIYGMEGIPEKDMDERRRLLEQKTQ
ESQKKKQQDDSDEYDDDESAASTSFQPQPVQPQQGYIP
P
MAQPGLPPVPGAPGMPP
GIPPLMPGVPPLMPGMPPVMPGMPPGMMPMGGMMPPGPGIPPLMPGMPPGMP
P
PVPRPGIPPMTQAQAVSAPGILNRPPAPTAAVPAPQPPVTKPLFPSAGQ
MGTPVTSSSTASSNSESLSA
S
SKALFPSTAQ
AQAAVQGPVGTDFKPLNSTPAATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITS
K
PATLTTTSATSKLIHPDEDISL
EERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPPQPGLPQQQAMR
P
PMPPH
GQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY



Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser