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Report for CCDS48929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48929.1 Public Mus musculus 11 Krt36 23 108 98 CCDS HistoryNCBI Gene:16673Re-query CCDS DB by CCDS ID:48929.1Re-query CCDS DB by GeneID:16673See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107416.2 ENSMUSP00000103039.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107416.2Link to Ensembl Protein Viewer:ENSMUSP00000103039.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107416Re-query CCDS DB by Protein ID:ENSMUSP00000103039
Original member Current member NCBI NM_001174099.1 NP_001167570.1 Accepted alive Link to Nucleotide Sequence:NM_001174099.1Link to Protein Sequence:NP_001167570.1Re-query CCDS DB by Nucleotide ID:NM_001174099Re-query CCDS DB by Protein ID:NP_001167570Link to BLAST:NP_001167570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167570.1 473 B1AQ75 473 100% 0 0

Chromosomal Locations for CCDS 48929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100102226 100102439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100102803 100103023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100103171 100103296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100103389 100103550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100104046 100104202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100104429 100104511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100105138 100105596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCCACCCAGATCTGCACCCCGACCTTCTCTGCTGGGTCTGCCAAGGGCCTCTGTGGCACTTCAGGGA
GCTTCTCTCGGATATCTTCCATCCATTCCATGGGCTCCTGCAGGGCCCCCAGTTTGGTTGGCACTGTGGG
GTCCGTGTCCTCCTTCAGGACAGGCTTCTCTGGCCCTGGGAGCTGCTTGCCAGGCTCCTACCTGTCCTCT
GGGTGCCACTCCTCTGGCTTTGCTGGGAGCGGGGGATGGTTCTGCGAGGGCGCCTTCAATGGCAACGAGA
AGGCGACCATGCAGATCTTGAATGACCGACTGGCCAACTACCTGGAGAAGGTGCGGCAGCTGGAGCAGGA
GAACACACAGCTGGAGTGCCGCATCCGAGAGTGGTACGAGTGTCAGATCCCATACATCTGCCCGGACTAC
CAGTCCTACTTCAAGACTGCTGAGGAGTTGCAGCAGAAGATCCTGCTGACCAAGTCTGAGAATGCCAGGC
TGATATTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTCCGGACCAAGTATGAGACGGAGTTGTC
CCTGCGACAGCTGGTAGAGGCTGACATCAATGGTCTACGCCGGATCTTGGATGAGCTGACCTTGTGTAAG
GCTGACCTGGAGGCACAGGTTGAGTCCCTGAAGGAGGAGCTGCTGTGTCTCAAGAGGAACCATGAAGAGG
AAGTCAATGCCCTCCGTTCCCAGCTTGGGGACCGACTGAATGTGGAGGTGGATGCTGCTCCCCCAGTGGA
TCTCAACAAGATACTGGATGACATGCGATGCCAGTATGAGACGCTGGTGGAGAATAACCGTAGAGATGTG
GAGGCTTGGTTCAACACTCAGACCGAGGAGCTGAACCAGCAGGTGGTATCCAGCTCAGAGCAGCTGCAGT
GTTGCCAGACAGAGATCATTGAGCTGAGACGCACAGTCAACTCCCTGGAGATCGAGCTGCAGGCTCAACA
GAGCATGAGGAATTCTCTGGAATCTACCCTGGCTGAGACAGAGGCCCGCTACAGCTCCCAGCTGGGCCAG
ATGCAGTGCCTGATCACCAACGTGGAATCCCAGCTGGCTGAGATTCGTTGTGACCTGGAGCGGCAGAACC
ATGAGTATCAGGTGTTACTGGATGTCAAGGCCCGGCTGGAGTCAGAGATTGCCACCTACCGTCGCCTGCT
GGATGGGGAGGACTGCAAGCTTCCTGCCCACCCTTGTTCCACGGAATGCAAGCCTGCTGTAAGAGTACCT
TATATCCCTTCTACAACCTGCACTCCAGCTGGGCCCTGCACCCCAGCTGGGCCCTGCACCCCAGCTCCTC
AAGTCAGCACCCAGATCCGGACCATCACCGAGGAGATCAGGGATGGAAGAGTCATCTCCTCCAGGGAGCA
CGTGGTGCCCCGGGCAATGTGA

Translation (473 aa):
MATQICTPTFSAGSAKGLCGTSGSFSRISSIHSMGSCRAPSLVGTVGSVSSFRTGFSGPGSCLPGSYLSS
GCHSSGFAGSGGWFCEGAFNGNEKATMQILNDRLANYLEKVRQLEQENTQLECRIREWYECQIPYICPDY
QSYFKTAEELQQKILLTKSENARLILQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCK
ADLEAQVESLKEELLCLKRNHEEEVNALRSQLGDRLNVEVDAAPPVDLNKILDDMRCQYETLVENNRRDV
EAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVNSLEIELQAQQSMRNSLESTLAETEARYSSQLGQ
MQCLITNVESQLAEIRCDLERQNHEYQVLLDVKARLESEIATYRRLLDGEDCKLPAHPCSTECKPAVRVP
YIPSTTCTPAGPCTPAGPCTPAPQVSTQIRTITEEIRDGRVISSREHVVPRAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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