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Report for CCDS48939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48939.1 Public Mus musculus 11 Cd300lg 23 108 98 CCDS HistoryNCBI Gene:52685Re-query CCDS DB by CCDS ID:48939.1Re-query CCDS DB by GeneID:52685See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107164.2 ENSMUSP00000102782.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107164.2Link to Ensembl Protein Viewer:ENSMUSP00000102782.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107164Re-query CCDS DB by Protein ID:ENSMUSP00000102782
Original member NCBI NM_001160711.1 NP_001154183.1 Updated not alive Link to Nucleotide Sequence:NM_001160711.1Link to Protein Sequence:NP_001154183.1Re-query CCDS DB by Nucleotide ID:NM_001160711Re-query CCDS DB by Protein ID:NP_001154183
Current member NCBI NM_001160711.2 NP_001154183.1 Accepted alive Link to Nucleotide Sequence:NM_001160711.2Link to Protein Sequence:NP_001154183.1Re-query CCDS DB by Nucleotide ID:NM_001160711Re-query CCDS DB by Protein ID:NP_001154183Link to BLAST:NP_001154183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154183.1 415 Q1ERP8-3 415 100% 0 0

Chromosomal Locations for CCDS 48939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102041591 102041633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102042972 102043304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102046067 102046198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102046854 102047187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102048690 102048802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102050478 102050530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102053471 102053590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102054094 102054213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGAGGCCTCTGGTCCTGCTATGGGGCTGCCTGGTGCTCCCAGGTTATGAAGCCCTGAAGGGTCCAAAGG
AGATCAGTGGATTTGAAGGTGACACCGTGTCCCTGCGGTGTACCTACGTGGAGAAGATGAAGGAGCACAG
GAAGTATTGGTGCCGGCAGGGTGGCATCCTGGTGTCACGCTGCGGTGACATTGTCTACGCAAATCAGGAC
CAGGAGGTGACTCGAGGCAGGATGTCCATCCGAGACAGTCCCCAAGAGCTCTCGATGACCGTGATCATGA
GGGACCTTACCCTGAAGGATTCAGGGAAGTACTGGTGTGGGATTGACAGACTGGGCCGCGATGAGTCTTT
TGAGGTTACACTCATTGTCTTTCCAGGAAAAAGGGACAATGCTGTCCCTGCTGGCACCTGCTGTCCTTCT
TCCCCCACCCCCTCCTTCCAGCCTCTTACACCTACAAGGAGCCTGCAGCCCAAGGCAAAAGCCTGGCAGA
CTCAGCTCCCAGAACCGACTTCTCCTGGTCTCCACCCGACAGTCGTCACGGCCAAACAGGGCAAGACAGG
GGTCAAAGCCCCTGTATTCACCGAGGTGGCCCCAGCCTGGTCTACAGGAACTTCCCAGGTCCCCCCAGGA
ATCTCTCCATATGCTGGGAGCTCTCCTCACACAGCGACCCCAGCCCGATCTGCAGGAACCTCCCAGGTTC
CCCCAGGAATCTCTCCATATGCTGGGAGGTCTCCTCACACAGCGACCTCTCCTCATGCAGGGAGCTCCCG
TCCAGTCGTCTGGCTGCCCCTTACCACGCCACAGGACTCCAGGGCTGTAGCCAGCAGTGTCTCCAAGCCC
AGTGTGTCCATCCCGATGGTCCGCATGATGGCCCCAGTCCTGATACTCTTGTCCCTGCTGTTGGCTGCAG
GACTAATTGCCTTTGGCAGCCACATGCTCCGGTGGAGAAAGAAAGCTTGGCTGGCCACAGAGACACAGAA
GAACGAGAAGGTCTACCTTGAAACCTCGCTGCCAGGGAACGGCTGGACCACTGAAGACTCGACGATAGAC
CTTGCAGTGACTCCTGAATGTCTCAGAAACCTCAACCCTTCTGCTGTGCCCTCTCCTGAGACACAGAACC
TCAGTCAGTCTACAGAGGAGGAAGAGGCAGCTCGTTCCCTGGACGACGACAAGGAGGACGTGATGGCACC
CCCTCCCTTGCAGATGTCTGCGGAGGAACTGGCCTTCTCTGAGTTCATCTCTGTGTAA

Translation (415 aa):
MRPLVLLWGCLVLPGYEALKGPKEISGFEGDTVSLRCTYVEKMKEHRKYWCRQGGILVSRCGDIVYANQD
QEVTRGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPGKRDNAVPAGTCCPS
SPTPSFQPLTPTRSLQPKAKAWQTQLPEPTSPGLHPTVVTAKQGKTGVKAPVFTEVAPAWSTGTSQVPPG
ISPYAGSSPHTATPARSAGTSQVPPGISPYAGRSPHTATSPHAGSSRPVVWLPLTTPQDSRAVASSVSKP
SVSIPMVRMMAPVLILLSLLLAAGLIAFGSHMLRWRKKAWLATETQKNEKVYLETSLPGNGWTTEDSTID
LAVTPECLRNLNPSAVPSPETQNLSQSTEEEEAARSLDDDKEDVMAPPPLQMSAEELAFSEFISV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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