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Report for CCDS49052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49052.1 Public Mus musculus 12 Agmo 23 108 98 CCDS HistoryNCBI Gene:319660Re-query CCDS DB by CCDS ID:49052.1Re-query CCDS DB by GeneID:319660See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049874.13 ENSMUSP00000051441.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049874.13Link to Ensembl Protein Viewer:ENSMUSP00000051441.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049874Re-query CCDS DB by Protein ID:ENSMUSP00000051441
Original member Current member NCBI NM_178767.5 NP_848882.2 Accepted alive Link to Nucleotide Sequence:NM_178767.5Link to Protein Sequence:NP_848882.2Re-query CCDS DB by Nucleotide ID:NM_178767Re-query CCDS DB by Protein ID:NP_848882Link to BLAST:NP_848882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848882.2 447 Q8BS35-1 447 100% 0 0

Chromosomal Locations for CCDS 49052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 37242042 37242167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37243706 37243836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37252423 37252574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37347259 37347362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37357632 37357727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37398690 37398756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37401922 37401987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37402079 37402158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37405311 37405445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37405920 37406036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37413997 37414079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37414884 37414989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 37581444 37581524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGAGGAGCCCAGGAGCCCAAGACAATGTTTCAGTTTCTCAGGGTATGCGAGCGATGTTTTACATGATGG
AGCCCAGTGAAACTGCCTTCCAAACTGTTGAAGAGGTGCCTGATTACGTAAAAAAGGCGACTCCATTTTT
TATCTTCTTGATTCTGCTTGAACTAGTCATCAGCTGGATTCTCAAAGGGAAACCATCAGGTCGTTTGGAT
GATGCTCTCACATCTATATCAGCTGGTGTTGTGTCTCGGCTTCCAAGTCTGTTCTTCAGGAGCCTTGAAG
TGACCAGTTATATTTATATCTGGGAAAACTACAGACTTTTGGAATTGCCTTGGGATTCTACCTGGACGTG
GTATTTCACTTTCTTAGGAGTTGACTTTGGCTACTACTGGTTCCACCGCATGGCTCATGAGATTAATATT
TTCTGGGCAGCACACCAAGCACACCACAGTTCTGAAGACTATAACTTATCCACAGCACTGAGACAGTCTG
TCTTGCAGCAGTATAGTTCCTGGGTTTTCTACTGTCCACTGGCCCTTTTCATACCACCTTCAGTGTTTGC
TGTTCATATTCAATTCAATCTCCTCTACCAATTTTGGATCCACACAGAGATCATCAGAACCCTTGGCCCT
TTGGAAGTGATCCTTAATACTCCTAGCCATCACAGAGTTCATCATGGTAGAAATCGTTACTGCATTGATA
AAAACTATGCTGGCACTCTTATTATTTGGGATAGAATTTTTGGGACATTTGAAGCAGAGAATGAGCAGGT
CATATATGGTCTAACCCATCCCATTGGTACATTTGAGCCATTCAACGTGCAGTTTCACCATTTACTTTAT
ATATGGACTACATTCTGGACCACACCTGGATTCTGCCATAAGTTTTCTGTCCTATTTAAAGGACCAGGAT
GGGGTCCAGGTAAACCAAGACTTGGCCTGAGTGAAGAAATTCCAGAGGTTACAGGACAGGAAGTCCCCTT
CTCATCCTCAGCATCCCAGCTTTTAAAGATCTACACTGTCCTCCAGTTTGCAGTAATGCTGGCATTTTAT
GAAGAGACCTTTGCAAACACAGCGGTACTGTCCCAGGTCACTCTTCTTCTGAGAATCTTCTTCTTTATCC
TGACCTTGACGTCCATTGGTTTTCTTCTGGACCAAAGATCCAAGGCAGCTACTATGGAAACTTTCCGGTG
CCTGTTGTTCCTAACCCTGCACAGATTTGGTCACTTAAAGCCTCTTATTCCATCTTTATCTTTTGCATTT
GAGATTTTCTTTTCGGTTTGCATTGCTTTCTGGGGCGTAAGAAGCATAACACAACTCACCTCTGGCTCTT
GGAAAAAGCCTTAA

Translation (447 aa):
MRSPGAQDNVSVSQGMRAMFYMMEPSETAFQTVEEVPDYVKKATPFFIFLILLELVISWILKGKPSGRLD
DALTSISAGVVSRLPSLFFRSLEVTSYIYIWENYRLLELPWDSTWTWYFTFLGVDFGYYWFHRMAHEINI
FWAAHQAHHSSEDYNLSTALRQSVLQQYSSWVFYCPLALFIPPSVFAVHIQFNLLYQFWIHTEIIRTLGP
LEVILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEQVIYGLTHPIGTFEPFNVQFHHLLY
IWTTFWTTPGFCHKFSVLFKGPGWGPGKPRLGLSEEIPEVTGQEVPFSSSASQLLKIYTVLQFAVMLAFY
EETFANTAVLSQVTLLLRIFFFILTLTSIGFLLDQRSKAATMETFRCLLFLTLHRFGHLKPLIPSLSFAF
EIFFSVCIAFWGVRSITQLTSGSWKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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