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Report for CCDS49110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49110.1 Reviewed, update pending Mus musculus 12 Lin52 23 108 98 CCDS HistoryNCBI Gene:217708Re-query CCDS DB by CCDS ID:49110.1Re-query CCDS DB by GeneID:217708See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137170.2 ENSMUSP00000133045.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137170.2Link to Ensembl Protein Viewer:ENSMUSP00000133045.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137170Re-query CCDS DB by Protein ID:ENSMUSP00000133045
Original member NCBI NM_173756.4 NP_776117.1 Updated not alive Link to Nucleotide Sequence:NM_173756.4Link to Protein Sequence:NP_776117.1Re-query CCDS DB by Nucleotide ID:NM_173756Re-query CCDS DB by Protein ID:NP_776117
Current member NCBI NM_173756.5 NP_776117.2 Pending alive Link to Nucleotide Sequence:NM_173756.5Link to Protein Sequence:NP_776117.2Re-query CCDS DB by Nucleotide ID:NM_173756Re-query CCDS DB by Protein ID:NP_776117Link to BLAST:NP_776117.2

Chromosomal Locations for CCDS 49110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84451513 84451543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84456241 84456315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84457949 84457986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84459619 84459685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84462369 84462452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84529690 84529745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGGGCTGGAAGATGGCGTCTCCCACAGACGGGACGGATTTGGAAGCATCTTTGCTAAGTTTTGAGAAAC
TTGACCGTGCCTCACCAGATCTCTGGCCAGAACAGCTACCAGGTGTCGCTGAATTTGCAGCTTCTTTCAA
AAGTCCCATCACAAGCTCTCCACCGAAATGGATGGCTGAGATAGAGCGTGATGACATTGATATGTTGAAA
GAACTGGGGAGCCTCACCACAGCTAACCTGATGGAGAAGGTACGAGGCCTACAGAACCTGGCCTACCAGC
TGGGGCTGGATGAGTCCAGAGAGATGACAAGGGGAAAATTCTTGAACATTCTAGAAAAGCCCAAGAAGTA
G

Translation (116 aa):
MGWKMASPTDGTDLEASLLSFEKLDRASPDLWPEQLPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLK
ELGSLTTANLMEKVRGLQNLAYQLGLDESREMTRGKFLNILEKPKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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