NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4920.1 Public Homo sapiens 6 ADGRF1 24 110 108 CCDS HistoryNCBI Gene:266977Re-query CCDS DB by CCDS ID:4920.1Re-query CCDS DB by GeneID:266977See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371243.2 ENSP00000360289.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371243.2Link to Ensembl Protein Viewer:ENSP00000360289.2Re-query CCDS DB by Nucleotide ID:ENST00000371243Re-query CCDS DB by Protein ID:ENSP00000360289
Original member Current member NCBI NM_025048.4 NP_079324.2 Accepted alive Link to Nucleotide Sequence:NM_025048.4Link to Protein Sequence:NP_079324.2Re-query CCDS DB by Nucleotide ID:NM_025048Re-query CCDS DB by Protein ID:NP_079324Link to BLAST:NP_079324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079324.2 218 Q5T601-2 218 100% 0 0

Chromosomal Locations for CCDS 4920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47020452 47020497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47020731 47020789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47021958 47022058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47024044 47024217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47025854 47026003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47027704 47027761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47028993 47029061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGAAAGTTGGAGTGCTGTGGCTCATTTCTTTCTTCACCTTCACTGACGGCCACGGTGGCTTCCTGGGGA
AAAATGATGGCATCAAAACAAAAAAAGAACTCATTGTGAATAAGAAAAAACATCTAGGCCCAGTCGAAGA
ATATCAGCTGCTGCTTCAGGTGACCTATAGAGATTCCAAGGAGAAAAGAGATTTGAGAAATTTTCTGAAG
CTCTTGAAGCCTCCATTATTATGGTCACATGGGCTAATTAGAATTATCAGAGCAAAGGCTACCACAGACT
GCAACAGCCTGAATGGAGTCCTGCAGTGTACCTGTGAAGACAGCTACACCTGGTTTCCTCCCTCATGCCT
TGATCCCCAGAACTGCTACCTTCACACGGCTGGAGCACTCCCAAGCTGTGAATGTCATCTCAACAACCTC
AGCCAGAGTGTCAATTTCTGTGAGAGAACAAAGATTTGGGGCACTTTCAAAATTAATGAAAGGTTTACAA
ATGACCTTTTGAATTCATCTTCTGCTATATACTCCAAATATGCAAATGGAATTGAAATTCAACTTAAAAA
AGCATATGAAAGAATTCAAGGTTTTGAGTCGGTTCAGGTCACCCAATTTCGAATGTCACTCTTGTCGCCC
AAGTTGGAGTGCAATGGCACAATCTAG

Translation (218 aa):
MKVGVLWLISFFTFTDGHGGFLGKNDGIKTKKELIVNKKKHLGPVEEYQLLLQVTYRDSKEKRDLRNFLK
LLKPPLLWSHGLIRIIRAKATTDCNSLNGVLQCTCEDSYTWFPPSCLDPQNCYLHTAGALPSCECHLNNL
SQSVNFCERTKIWGTFKINERFTNDLLNSSSAIYSKYANGIEIQLKKAYERIQGFESVQVTQFRMSLLSP
KLECNGTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH