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Report for CCDS49228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49228.1 Public Mus musculus 13 Serpinb6a 23 108 98 CCDS HistoryNCBI Gene:20719Re-query CCDS DB by CCDS ID:49228.1Re-query CCDS DB by GeneID:20719See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017188.13 ENSMUSP00000017188.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017188.13Link to Ensembl Protein Viewer:ENSMUSP00000017188.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000017188Re-query CCDS DB by Protein ID:ENSMUSP00000017188
Original member Current member NCBI NM_001164117.1 NP_001157589.1 Accepted alive Link to Nucleotide Sequence:NM_001164117.1Link to Protein Sequence:NP_001157589.1Re-query CCDS DB by Nucleotide ID:NM_001164117Re-query CCDS DB by Protein ID:NP_001157589Link to BLAST:NP_001157589.1

Chromosomal Locations for CCDS 49228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 33918041 33918442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33918741 33918896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33922926 33923068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33925312 33925429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33930025 33930177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33931472 33931646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33935627 33935679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGGGGCTGCGCGGAGCCGGCCTGGCTGCTGCGCGGGGCCCCGGGGCTACAGGCTCACCATCATGGATC
CTCTACAGGAAGCAAATGGCACCTTTGCCTTAAACCTTTTGAAAATACTGGGTGAAGACAGCTCAAAAAA
TGTATTTTTGTCACCCATGAGCATATCCTCAGCCCTGGCTATGGTCTTCATGGGGGCAAAAGGAACCACT
GCTAGCCAGATGGCTCAGGCACTTGCTTTGGATAAATGCAGCGGCAATGGAGGTGGAGATGTCCACCAGG
GCTTCCAGTCCCTTCTCACCGAAGTGAACAAAACTGGCACACAGTACTTGCTCAGAACAGCCAACAGGCT
CTTCGGGGATAAGACTTGTGATCTTTTAGCGTCTTTTAAAGATTCCTGCCTCAAGTTCTATGAAGCAGAG
TTGGAAGAGCTGGACTTTCAGGGTGCTACAGAGGAGTCCCGACAGCACATCAACACCTGGGTAGCCAAAA
AGACAGAAGATAAAATCAAAGAGGTGCTGTCTCCAGGTACAGTGAATTCTGATACATCGCTAGTCCTTGT
GAATGCCATCTACTTCAAAGGAAACTGGGAGAAGCAGTTTAACAAAGAGCATACCAGGGAGATGCCATTC
AAAGTCAGCAAGAATGAGGAGAAACCTGTGCAAATGATGTTTAAGAAGTCTACCTTTAAGATGACCTATA
TTGGAGAGATATTCACTAAGATTCTGTTGCTTCCCTATGTCAGCAGTGAGCTGAACATGATCATCATGCT
TCCAGATGAGCACGTTGAACTGAGTACAGTGGAAAAGGAAGTAACTTACGAGAAATTTATAGAGTGGACA
AGGCTGGACAAGATGGACGAAGAAGAGGTAGAAGTATTTCTCCCAAAGTTTAAGCTGGAGGAGAATTACA
ACATGAACGATGCCCTCTACAAGTTGGGCATGACTGATGCCTTTGGCGGCAGGGCAGACTTTTCTGGAAT
GTCTTCCAAGCAAGGCTTGTTTCTGTCTAAGGTTGTGCATAAGGCCTTTGTGGAGGTTAATGAGGAGGGC
ACAGAGGCTGCAGCTGCTACAGCTGGCATGATGACGGTGAGGTGCATGAGATTCACTCCCCGCTTCTGTG
CCGACCACCCCTTCCTTTTCTTCATTCACCATGTTAAGACCAATGGAATTCTGTTCTGTGGCCGGTTCTC
CTCTCCCTGA

Translation (399 aa):
MGAARSRPGCCAGPRGYRLTIMDPLQEANGTFALNLLKILGEDSSKNVFLSPMSISSALAMVFMGAKGTT
ASQMAQALALDKCSGNGGGDVHQGFQSLLTEVNKTGTQYLLRTANRLFGDKTCDLLASFKDSCLKFYEAE
LEELDFQGATEESRQHINTWVAKKTEDKIKEVLSPGTVNSDTSLVLVNAIYFKGNWEKQFNKEHTREMPF
KVSKNEEKPVQMMFKKSTFKMTYIGEIFTKILLLPYVSSELNMIIMLPDEHVELSTVEKEVTYEKFIEWT
RLDKMDEEEVEVFLPKFKLEENYNMNDALYKLGMTDAFGGRADFSGMSSKQGLFLSKVVHKAFVEVNEEG
TEAAAATAGMMTVRCMRFTPRFCADHPFLFFIHHVKTNGILFCGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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