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Report for CCDS49442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49442.1 Under review, update Mus musculus 14 Gm5460 23 108 98 CCDS HistoryNCBI Gene:432838Re-query CCDS DB by CCDS ID:49442.1Re-query CCDS DB by GeneID:432838See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100719.2 ENSMUSP00000098285.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100719.2Link to Ensembl Protein Viewer:ENSMUSP00000098285.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100719Re-query CCDS DB by Protein ID:ENSMUSP00000098285
Original member NCBI NM_001034880.2 NP_001030052.1 Updated not alive Link to Nucleotide Sequence:NM_001034880.2Link to Protein Sequence:NP_001030052.1Re-query CCDS DB by Nucleotide ID:NM_001034880Re-query CCDS DB by Protein ID:NP_001030052
Current member NCBI NM_001034880.3 NP_001030052.2 Pending alive Link to Nucleotide Sequence:NM_001034880.3Link to Protein Sequence:NP_001030052.2Re-query CCDS DB by Nucleotide ID:NM_001034880Re-query CCDS DB by Protein ID:NP_001030052Link to BLAST:NP_001030052.2

Chromosomal Locations for CCDS 49442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34041965 34042300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34042787 34042825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34043803 34043946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34045781 34046026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGACCACTACTCCTGCCCCAGAAACCTCTACAGTTCTGACAACTTCAACAACAAACCCTATCCCCAAAC
CAACTATTCCAGGCTCCCCTACTATACTCCCCCCTCCTCCCGCTCCTCCTCGTCCTCCTTCACCTGCTCC
TCCCCCACTTCCTCCACCTCCTCCTCGGCCACCTCCACCTCTACCTCTACCTCCACCTCCACCTCTGCCT
CCAACTTCACTTGTGCCTCTGCCGCCAGCTGAGCCAAGCAAGGAAGTTTTGCTCAGCACCGTGGTACTGC
TCCTGATGCTGACCCCTGTAGTGCTGTGGTGGGTCTGGTGGCTGTGCTGCAGACCGCCTGTCAAGGCCCT
GCCAGCACCTGTACCACAACCAACGCCCCAAAAGAAAGAAAAGGGCCCTCCTCCAGTGCCTCCTCCAGTG
CCTCCCCCAGCTCCACCCCCAGCACCGGTCACTGGGCGCCCCATTGTAATCATCTGCTGCTGTACCTGCT
ATGATGTGTGTGTGAGAAGAGGAACAGAGGGGCCGTATATCAACCTTGACCTCCTGAAGGACCTCTGTTC
TCGAGTTCCCTGCACCTCTAAGACTGGCTTCTTCCCACCTGAGGAGTACCTGTGCCTGGCCTCCTGTTCT
CAGTGCCACCATCCTCCACACAGTTGTCCCAGGCCATTTCCTTTGCTCCCTTCCCCTGCCCAGGTGTCTC
CCAAAGCCCCCTTGTCACTGCCTCCCATGCAGCGGACCTCTCAGACACCACAGAGGCAATATTGA

Translation (254 aa):
MTTTPAPETSTVLTTSTTNPIPKPTIPGSPTILPPPPAPPRPPSPAPPPLPPPPPRPPPPLPLPPPPPLP
PTSLVPLPPAEPSKEVLLSTVVLLLMLTPVVLWWVWWLCCRPPVKALPAPVPQPTPQKKEKGPPPVPPPV
PPPAPPPAPVTGRPIVIICCCTCYDVCVRRGTEGPYINLDLLKDLCSRVPCTSKTGFFPPEEYLCLASCS
QCHHPPHSCPRPFPLLPSPAQVSPKAPLSLPPMQRTSQTPQRQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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