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Report for CCDS49496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49496.1 Public Mus musculus 14 Irf9 23 108 98 CCDS HistoryNCBI Gene:16391Re-query CCDS DB by CCDS ID:49496.1Re-query CCDS DB by GeneID:16391See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134863.7 ENSMUSP00000120525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134863.7Link to Ensembl Protein Viewer:ENSMUSP00000120525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134863Re-query CCDS DB by Protein ID:ENSMUSP00000120525
Original member Current member NCBI NM_001159417.1 NP_001152889.1 Accepted alive Link to Nucleotide Sequence:NM_001159417.1Link to Protein Sequence:NP_001152889.1Re-query CCDS DB by Nucleotide ID:NM_001159417Re-query CCDS DB by Protein ID:NP_001152889Link to BLAST:NP_001152889.1

Chromosomal Locations for CCDS 49496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55604133 55604243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55604468 55604553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55605052 55605232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55605721 55605904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55606093 55606166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55606318 55606438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55606537 55606608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55607514 55607855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55608685 55608800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55608921 55609031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCACCTCCCCGGAGGAGAATTGAAACTTAGGGTGGGGACTGTAGAAAGGGGAGGAGAGATCAGAAAAA
GCCTAGAACCTGCTAAGCCTGGGACCTTTTCAGCGGCTCAGGCCCTGCCCATTTCTTCAGCTCCGCCCTT
GCCCCCAGCTGCTGCCCCACCTACCCCTCTAGCAAAGAGGGGTATGGTAAGGAGAAGGATGGCCTCAGGC
AAAGTACGCTGCACCCGAAAGCTGCGGAGCTGGATCGTGGAGCAGGTGGAGAGTGGCCATTTCCCAGGGG
TGTGCTGGGACGATGCAGCCAAGACCATGTTCCGGATTCCCTGGAAGCATGCAGGCAAGCAAGACTTCCG
AGAGGACCAGGATGCTGCCATATTCAAGGCTTGGGCACTGTTTAAGGAAAAGCACAAAGATGGGGACATA
GGACACCCCGCTGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTC
CCGAGAGAGGTCGTATGGATGTTGCTGAACCCTACAAAGTATATCGAATACTGCCAGCAGGAACCCTCCC
TAACCAACCACGGAACCAGAAATCACCATGCAAGCGAAGTATCAGTTGTGTGTCACCTGAGAGGGAAGAA
AATATGGAAAATGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTG
GCAATGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGAGCTGGCACAAC
TGAGGCCACCATTAGAGAGGACCCAGTGTTCCTGGAGCATCAACTTCCTCTGAACTCAGACTACTCGCTG
CTGCTCACCTTCATCTATGGTGGCCGAGTGGTGGGTAAGACCCAGGTGCACAGCCTAGACTGTCGGCTCG
TGGCTGAGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAAACCCGACCCACTGGAGCC
TACCCAGCACCTGCTGAATCAGCTTGACAGAGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTTTGTT
CAGCGCCTTTGCCCCATCCCCATCTCCTGGAATGCACCAGAGGCCCCACCCGGGCCTGGTCCTCATCTGC
TGCCCAGCAATAAGTGTGTGGAGCTCTTCAAGACCACCTACTTCTGTAGAGATTTGGCCCAGTACTTCCA
GGGCCAGGGGCCCCCACCCAAGTTCCAAGCAACCCTACATTTCTGGGAGGAGAGTCCTGGCTCTAGCCAT
AGCCAAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAG
AAGAGGAGAAAGCTGCCTTGTTCCTGTTACAGCACACAGAGCAGTCACCCTCTGCTCTGGGACACTGA

Translation (465 aa):
MHLPGGELKLRVGTVERGGEIRKSLEPAKPGTFSAAQALPISSAPPLPPAAAPPTPLAKRGMVRRRMASG
KVRCTRKLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFKEKHKDGDI
GHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGTLPNQPRNQKSPCKRSISCVSPEREE
NMENGRTNGVVNHSDSGSNIGGGGNGSNRSDSNSNCNSELEEGAGTTEATIREDPVFLEHQLPLNSDYSL
LLTFIYGGRVVGKTQVHSLDCRLVAERSDSESSMEQVEFPKPDPLEPTQHLLNQLDRGVLVASNSRGLFV
QRLCPIPISWNAPEAPPGPGPHLLPSNKCVELFKTTYFCRDLAQYFQGQGPPPKFQATLHFWEESPGSSH
SQENLITVQMEQAFARHLLEKIPEEEKAALFLLQHTEQSPSALGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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