NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4953.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4953.2 Public Homo sapiens 6 LRRC1 24 110 108 CCDS HistoryNCBI Gene:55227Re-query CCDS DB by CCDS ID:4953.2Re-query CCDS DB by GeneID:55227See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4953.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370888.6 ENSP00000359925.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370888.6Link to Ensembl Protein Viewer:ENSP00000359925.1Re-query CCDS DB by Nucleotide ID:ENST00000370888Re-query CCDS DB by Protein ID:ENSP00000359925
Original member Current member NCBI NM_018214.5 NP_060684.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018214.5Link to Protein Sequence:NP_060684.4Re-query CCDS DB by Nucleotide ID:NM_018214Re-query CCDS DB by Protein ID:NP_060684Link to BLAST:NP_060684.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060684.4 524 Q9BTT6-1 524 100% 0 0

Chromosomal Locations for CCDS 4953.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53795257 53795415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53842110 53842227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53878993 53879071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53882887 53882976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53896498 53896554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53896829 53896892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53897285 53897359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53899747 53899891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53902629 53902747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53904379 53904462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53913854 53913969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53919498 53919670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53920625 53920761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53922635 53922793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTTCCACTGCATCCCCCTGTGGCGGTGCAACCGTCATGTGGAGAGCATCGACAAGCGCCACTGCTCGC
TG
GTCTACGTCCCCGAGGAGATCTACCGCTATGCCCGGAGCCTGGAGGAGCTGCTGCTGGACGCCAACCA
G
CTCCGCGAGCTGCCCGAGCAATTTTTCCAGCTAGTCAAATTACGAAAGCTTGGACTTAGTGATAATGAA
ATT
CAGCGGCTCCCTCCAGAAATAGCAAACTTCATGCAGCTGGTGGAACTAGATGTGTCTCGAAATGAGA
TT
CCTGAAATTCCAGAAAGCATTTCATTCTGTAAAGCACTGCAGGTAGCTGACTTCAGCGGAAACCCACT
G
ACTAGGTTGCCAGAAAGCTTTCCTGAATTACAGAATTTAACATGTCTTTCTGTAAATGACATCTCACTA
CAG
TCTCTACCTGAAAATATTGGCAATCTTTATAACCTGGCTTCACTGGAACTGAGAGAGAATCTTCTTA
CA
TATCTTCCTGACTCTCTTACCCAGCTGCGAAGACTAGAAGAACTTGATTTAGGAAACAATGAAATATA
T
AATTTGCCAGAATCAATTGGAGCCCTCTTACATCTAAAAGATCTCTGGTTGGATGGAAATCAACTGTCA
GAA
TTACCTCAGGAAATAGGAAATCTGAAGAACCTGCTGTGTTTAGATGTCTCTGAAAACAGGTTGGAAA
GA
CTTCCTGAAGAAATCAGTGGCCTGACTTCATTAACGGATTTAGTCATTTCCCAGAACTTATTAGAAAC
G
ATTCCGGATGGCATTGGAAAACTAAAGAAACTGTCAATCTTGAAGGTGGATCAGAATAGACTCACACAG
TTG
CCTGAAGCAGTTGGGGAATGTGAAAGTCTCACTGAGTTAGTTCTTACAGAAAATCAGCTCCTGACCC
TG
CCTAAAAGCATTGGAAAACTAAAGAAGTTGAGCAACTTGAATGCAGACAGAAATAAATTAGTGTCCTT
A
CCAAAAGAGATCGGCGGGTGCTGCAGCCTCACTGTGTTCTGTGTACGTGACAACAGACTAACTCGGATA
CCT
GCAGAGGTGTCACAGGCAACAGAACTTCATGTCCTGGATGTGGCAGGGAACAGGTTGCTGCATCTAC
CT
TTATCCCTGACTGCCTTGAAGTTGAAGGCTCTGTGGCTATCTGACAACCAGTCCCAGCCCCTGCTTAC
A
TTCCAGACAGACACAGACTACACCACAGGAGAGAAGATTTTAACCTGTGTCTTACTTCCTCAGCTGCCT
TCT
GAACCTACTTGTCAAGAGAATCTGCCTCGCTGTGGTGCACTGGAGAACTTGGTAAATGATGTCTCTG
AT
GAAGCCTGGAACGAGCGTGCTGTCAACAGAGTCAGTGCGATCCGATTTGTGGAGGATGAGAAAGATGA
A
GAAGACAATGAGACGAGAACACTTCTAAGGCGAGCCACTCCACACCCAGGGGAGTTAAAGCACATGAAA
AAG
ACAGTGGAGAATTTACGGAATGACATGAATGCTGCTAAAGGACTGGACTCAAACAAAAACGAGGTCA
AT
CATGCCATTGACCGAGTGACCACTTCTGTGTAG


Translation (524 aa):
MFHCIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNE
I
QRLPPEIANFMQLVELDVSRN
EIPEIPESISFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISL
Q
SLPENIG
NLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLS
E
LPQ
EIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQ
L
PEAVGECESLTELVLTENQLL
TLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRI
P
AEVSQATELHVLDVAGN
RLLHLPLSLTALKLKALWLSDNQSQPLLTFQTDTDYTTGEKILTCVLLPQLP
S
EPTCQ
ENLPRCGALENLVNDVSDEAWNERAVNRVSAIRFVEDEKDEEDNETRTLLRRATPHPGELKHMK
K
TVENLRNDMNAAKGLDSNKNEVNHAIDRVTTSV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser