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Report for CCDS49538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49538.1 Public Mus musculus 14 Med4 23 108 98 CCDS HistoryNCBI Gene:67381Re-query CCDS DB by CCDS ID:49538.1Re-query CCDS DB by GeneID:67381See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022705.6 ENSMUSP00000022705.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022705.6Link to Ensembl Protein Viewer:ENSMUSP00000022705.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022705Re-query CCDS DB by Protein ID:ENSMUSP00000022705
Original member Current member NCBI NM_026119.3 NP_080395.1 Accepted alive Link to Nucleotide Sequence:NM_026119.3Link to Protein Sequence:NP_080395.1Re-query CCDS DB by Nucleotide ID:NM_026119Re-query CCDS DB by Protein ID:NP_080395Link to BLAST:NP_080395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080395.1 270 Q9CQA5-1 270 100% 0 0

Chromosomal Locations for CCDS 49538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73510061 73510185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73511155 73511221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73513805 73513975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73515290 73515347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73516636 73516722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73517207 73517338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73517894 73518066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGCGGCTTCTTCAAGTGGTGAGAAGGAAAAGGAGCGGATGGGAGGCGTTTCGGGAATGGCCGGCCTTG
GCAGTACGCGAGAGCGGCTTCTGTCTGCGCTGGAAGATCTGGAGGTCTTGTCGAGGGAACTCATAGAAAT
GCTTGCAATTTCAAGAAATCAGAAGCTATTACAGCTGGAAGAGGAAAACCAGGTCTTGGAGTTGCTAATT
CACCGAGATGGGGACTTCCAAGAACTAATGAAATTAGCACTTAATCAGGGAAAAGTTCACCACGAAATGC
AGGCTTTAGAGAAAGAAGTAGAGAAGAGAGACAGTGATATTCAGCAGCTGCAGAAACAGCTGAAAGAGGC
CGAGCAGATCCTGGCAACAGCTGTTTACCAGGCAAAGGAAAAACTCAAGTCAATAGAGAAAGCAAGAAAA
GGTGCTATCTCCTCTGAAGAAATCATTAAATATGCGCACAGGATTAGTGCAAGCAATGCTGTCTGTGCTC
CACTGACTTGGGTTCCAGGAGACCCTCGGAGGCCATACCCAACCGATTTAGAGATGAGAAGTGGATTGTT
GGGTCAGATGAACAATCCTTCCACCAGTGGTGTGAATGGTCACCTCCCGGGAGATGCCCTTGCAGCAGGT
AGACTGCCAGATGTCCTTGCTCCGCAGTACCCATGGCAGTCAAATGACATGTCTGTGAACATGCTGCCAC
CAAATCACAGCAGTGACTTTCTGTTGGAGCCTCCTGGGCACAACAAAGAAAATGAAGATGATGTTGAGGT
TATGTCAACAGACTCTTCGAGCAGCAGTAGCGACTCTGACTGA

Translation (270 aa):
MAASSSGEKEKERMGGVSGMAGLGSTRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLI
HRDGDFQELMKLALNQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARK
GAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGHLPGDALAAG
RLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVMSTDSSSSSSDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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