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Report for CCDS4956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4956.1 Public Homo sapiens 6 HCRTR2 24 110 108 CCDS HistoryNCBI Gene:3062Re-query CCDS DB by CCDS ID:4956.1Re-query CCDS DB by GeneID:3062See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370862.4 ENSP00000359899.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370862.4Link to Ensembl Protein Viewer:ENSP00000359899.3Re-query CCDS DB by Nucleotide ID:ENST00000370862Re-query CCDS DB by Protein ID:ENSP00000359899
Original member Current member EBI ENST00000615358.4 ENSP00000477548.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615358.4Link to Ensembl Protein Viewer:ENSP00000477548.1Re-query CCDS DB by Nucleotide ID:ENST00000615358Re-query CCDS DB by Protein ID:ENSP00000477548
Original member Current member NCBI NM_001384272.1 NP_001371201.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384272.1Link to Protein Sequence:NP_001371201.1Re-query CCDS DB by Nucleotide ID:NM_001384272Re-query CCDS DB by Protein ID:NP_001371201Link to BLAST:NP_001371201.1
Original member Current member NCBI NM_001526.5 NP_001517.2 Accepted alive Link to Nucleotide Sequence:NM_001526.5Link to Protein Sequence:NP_001517.2Re-query CCDS DB by Nucleotide ID:NM_001526Re-query CCDS DB by Protein ID:NP_001517Link to BLAST:NP_001517.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371201.1 444 O43614 444 100% 0 0
NP_001517.2 444 O43614 444 100% 0 0

Chromosomal Locations for CCDS 4956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55174588 55174810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55248639 55248817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55255136 55255379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55263707 55263822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55277380 55277600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55280323 55280444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55282225 55282454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGTCCGGCACCAAATTGGAGGACTCCCCCCCTTGTCGCAACTGGTCATCTGCTTCGGAGCTGAATGAAA
CTCAAGAGCCCTTTTTAAACCCCACCGACTATGACGACGAGGAATTCCTGCGGTACCTGTGGAGGGAATA
CCTGCACCCGAAAGAATATGAGTGGGTCCTGATCGCCGGGTACATCATCGTGTTCGTCGTGGCTCTCATT
GGGAACGTCCTGGTTTGTGTGGCAGTGTGGAAGAACCACCACATGAGGACGGTAACCAACTACTTCATAG
TCAATCTTTCTCTGGCTGATGTGCTCGTGACCATCACCTGCCTTCCAGCCACACTGGTCGTGGATATCAC
TGAGACCTGGTTTTTTGGACAGTCCCTTTGCAAAGTGATTCCTTATCTACAGACCGTGTCGGTGTCTGTG
TCTGTCCTCACACTGAGCTGTATCGCCTTGGATCGGTGGTATGCAATCTGTCACCCTTTGATGTTTAAGA
GCACAGCAAAGCGGGCCCGTAACAGCATTGTCATCATCTGGATTGTCTCCTGCATTATAATGATTCCTCA
GGCCATCGTCATGGAGTGCAGCACCGTGTTCCCAGGCTTAGCCAATAAAACCACCCTCTTTACGGTGTGT
GATGAGCGCTGGGGTGGTGAAATTTATCCCAAGATGTACCACATCTGTTTCTTTCTGGTGACATACATGG
CACCACTGTGTCTCATGGTGTTGGCTTATCTGCAAATATTTCGCAAACTCTGGTGTCGACAGATCCCTGG
AACATCATCTGTAGTTCAGAGAAAATGGAAGCCCCTGCAGCCTGTTTCACAGCCTCGAGGGCCAGGACAG
CCAACGAAGTCCCGGATGAGCGCTGTGGCGGCTGAAATAAAGCAGATCCGAGCCAGAAGGAAAACAGCCC
GGATGTTGATGATTGTGCTTTTGGTATTTGCAATTTGCTATCTACCAATTAGCATCCTCAATGTGCTAAA
GAGAGTATTTGGGATGTTTGCCCATACTGAAGACAGAGAGACTGTGTATGCCTGGTTTACCTTTTCACAC
TGGCTTGTATATGCCAATAGTGCTGCGAATCCAATTATTTATAATTTTCTCAGTGGAAAATTTCGAGAGG
AATTTAAAGCTGCGTTTTCTTGCTGTTGCCTTGGAGTTCACCATCGCCAGGAGGATCGGCTCACCAGGGG
ACGAACTAGCACAGAGAGCCGGAAGTCCTTGACCACTCAAATCAGCAACTTTGATAACATATCAAAACTT
TCTGAGCAAGTTGTGCTCACTAGCATAAGCACACTCCCAGCAGCCAATGGAGCAGGACCACTTCAAAACT
GGTAG

Translation (444 aa):
MSGTKLEDSPPCRNWSSASELNETQEPFLNPTDYDDEEFLRYLWREYLHPKEYEWVLIAGYIIVFVVALI
GNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFFGQSLCKVIPYLQTVSVSV
SVLTLSCIALDRWYAICHPLMFKSTAKRARNSIVIIWIVSCIIMIPQAIVMECSTVFPGLANKTTLFTVC
DERWGGEIYPKMYHICFFLVTYMAPLCLMVLAYLQIFRKLWCRQIPGTSSVVQRKWKPLQPVSQPRGPGQ
PTKSRMSAVAAEIKQIRARRKTARMLMIVLLVFAICYLPISILNVLKRVFGMFAHTEDRETVYAWFTFSH
WLVYANSAANPIIYNFLSGKFREEFKAAFSCCCLGVHHRQEDRLTRGRTSTESRKSLTTQISNFDNISKL
SEQVVLTSISTLPAANGAGPLQNW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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