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Report for CCDS49567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49567.1 Public Mus musculus 14 Mbnl2 23 108 98 CCDS HistoryNCBI Gene:105559Re-query CCDS DB by CCDS ID:49567.1Re-query CCDS DB by GeneID:105559See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088419.12 ENSMUSP00000085763.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088419.12Link to Ensembl Protein Viewer:ENSMUSP00000085763.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000088419Re-query CCDS DB by Protein ID:ENSMUSP00000085763
Original member Current member EBI ENSMUST00000227594.1 ENSMUSP00000154559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227594.1Link to Ensembl Protein Viewer:ENSMUSP00000154559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227594Re-query CCDS DB by Protein ID:ENSMUSP00000154559
Original member Current member NCBI NM_001360376.1 NP_001347305.1 Accepted alive Link to Nucleotide Sequence:NM_001360376.1Link to Protein Sequence:NP_001347305.1Re-query CCDS DB by Nucleotide ID:NM_001360376Re-query CCDS DB by Protein ID:NP_001347305Link to BLAST:NP_001347305.1
Original member Current member NCBI NM_175341.4 NP_780550.1 Accepted alive Link to Nucleotide Sequence:NM_175341.4Link to Protein Sequence:NP_780550.1Re-query CCDS DB by Nucleotide ID:NM_175341Re-query CCDS DB by Protein ID:NP_780550Link to BLAST:NP_780550.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347305.1 373 Q8C181-1 373 100% 0 0
NP_780550.1 373 Q8C181-1 373 100% 0 0

Chromosomal Locations for CCDS 49567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 120325239 120325412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120379150 120379314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120385391 120385591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120388900 120389163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120395712 120395765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120396451 120396604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120404638 120404732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120428935 120428949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGCCTTGAACGTTGCCCCCGTGAGAGACACAAAGTGGCTGACGCTGGAGGTCTGCAGACAGTACCAGA
GAGGAACGTGCTCACGCTCCGACGAAGAATGCAAGTTTGCTCACCCCCCCAAAAGTTGCCAGGTTGAAAA
TGGAAGAGTAATTGCCTGCTTTGATTCCCTCAAGGGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCAT
CCTCCGACACACTTAAAAACCCAGCTAGAGATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAG
CAGCGATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACGCCGCTCCATCCTGTGCCCACTTTTCC
TGTAGGTCCCACCATAGGGACAAATGCGGCTATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGA
GTTGGGTTAGTCCCAACAGAGGTTCTACCCACTACACCGGTCATTGTTCCCGGAAGTCCACCGGTCACTG
TCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGATAAACTGGAGGTATGCAGGGAGTTCCAGCG
AGGAAACTGTGCCCGGGGAGAGACAGACTGCCGCTTTGCACACCCGGCAGACAGCACCATGATCGACACA
AACGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAATATT
TTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGC
CGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATGACTCAGTCGACTGCCAAAGCACTGAAGCGACCTCTC
GAAGCAACTGTAGACCTGGCCTTCCCTCCGGGTGCTCTTCATCCCTTACCAAAGAGACAAGCACTTGAAA
AAAGCAACGGGGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTCTGACCAGTGCGCA
GCTGCAGCAGCACACGGCGTTCATCCCCACAGTACCCATGATGCACAGCGCTACGTCCGCCACTGTCTCT
GCAGCAACAACTCCTGCAACAAGTGTCCCCTTCGCAGCAACAGCCACAGCCAATCAGATAATTCTGAAAT
AA

Translation (373 aa):
MALNVAPVRDTKWLTLEVCRQYQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLH
PPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHPVPTFPVGPTIGTNAAISFAPYLAPVTPG
VGLVPTEVLPTTPVIVPGSPPVTVPGSTATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDT
NDNTVTVCMDYIKGRCMREKCKYFHPPAHLQAKIKAAQHQANQAAVAAQAAAAAATVMTQSTAKALKRPL
EATVDLAFPPGALHPLPKRQALEKSNGASTVFNPSVLHYQQALTSAQLQQHTAFIPTVPMMHSATSATVS
AATTPATSVPFAATATANQIILK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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