NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49667.1 Public Mus musculus 15 Micall1 23 108 98 CCDS HistoryNCBI Gene:27008Re-query CCDS DB by CCDS ID:49667.1Re-query CCDS DB by GeneID:27008See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040320.9 ENSMUSP00000042053.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040320.9Link to Ensembl Protein Viewer:ENSMUSP00000042053.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040320Re-query CCDS DB by Protein ID:ENSMUSP00000042053
Original member NCBI NM_177461.1 NP_803412.1 Updated not alive Link to Nucleotide Sequence:NM_177461.1Link to Protein Sequence:NP_803412.1Re-query CCDS DB by Nucleotide ID:NM_177461Re-query CCDS DB by Protein ID:NP_803412
Current member NCBI NM_177461.2 NP_803412.1 Accepted alive Link to Nucleotide Sequence:NM_177461.2Link to Protein Sequence:NP_803412.1Re-query CCDS DB by Nucleotide ID:NM_177461Re-query CCDS DB by Protein ID:NP_803412Link to BLAST:NP_803412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803412.1 870 Q8BGT6-1 870 100% 0 0

Chromosomal Locations for CCDS 49667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79109284 79109429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79114655 79114703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79115030 79115171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79119736 79119827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79120759 79120901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79122547 79122986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79124501 79124558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79125250 79125674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79126927 79127333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79129809 79129943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79130463 79130589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79130709 79130799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79130938 79131011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79131774 79131888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79132053 79132099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79133000 79133121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGGCGGGGCCGCGGGGCGCTCTCCTGGCCTGGTGTCGCCGCCAGTGCGAGGGCTACCGCGGCGTGGACA
TCCGCGACCTGAGCAGCTCCTTCCGGGACGGCCTGGCTTTCTGCGCCATCCTGCACCGGCACCGGCCCGA
CCTGCTCGACTTCCAATCTCTCTCCAAGGAAAATGTCTTCGAGAATAATCGATTGGCCTTTGAAGTGGCT
GAAAAGGAACTGGGCATCCCTGCTCTCTTGGACCCCAATGACATGGTCTCCATGAGTGTCCCTGACTGTC
TCAGCATCATGACCTATGTGTCCCAGTACTACAACCACTTCACCAGTTCTGGCCAAGCTGCTGCCTCACC
ACCCAAACCAGGAAAGGACCCAGCACCCCCCTCCCCCACATCCACATCACCCGCTGTGCAGCCAGGAGAG
GAGGCTCAGGGTGACGACCTCTCCCCAGACAGCCTGTCCGAGCAGGGCAAACAGCAGCCCCCGAGCAGCG
CATGCGCAGCCTGTGGGCAGCGGGTGCACCTGGTGCAGCGGTACTTGGCGGAGGGCAGACTCTACCACCG
GCACTGCTTCCGATGTCGGCAGTGTTCCAGCACGCTGGTCCCAGGCTCTTACAGTAGTGGGCCCGAAGAA
GGCACCTTTGTGTGTGCAGAACGCTGCACCAGGCTGGGTCCGGGAAGTCGGTCAGGAACTAGGCTCCTTT
CACAGCAAAGGCAGCAGCCAGCGGCGGCAGAAGCTAAAGATGCAGAGGATAATGACCCAAGCCTGAGTGT
GGCTGCAGTGGCTGAGGCAGACAGGCTCCAGGCCAGCTCCGAGGTACAGTTCCACACCCCAACCAAGCCA
CCTCTTCCCAGCAAGCCCCAGGAACTGGCCAGTCCCCCTGGTGGCCGGCCCACACCTGCCCCCAGGAAGG
CTTCCGAGAGTTCAGCCTTAACTCCCCCAACGCCAAGGCCTCGGTCTAGCCTGCAGCAAGATGGCACGGT
GGAGCAGAGTGTCAGCAGTGGCCTTGTGAACGGAAGACTACAGGAACCGCCTGTTCCCAAGCCAAGAGGG
ACACCCAAGCTGTCAGAGAGGATGGCAGCGCCAAGGAAGGATCCCCCATGGATCACATTGGTGCAGACAG
AGCCAAAGAAGAAGCCAGCCCCCCAGCCGCCCAGCAGTGGTCCTGGGCCACTGAGTCAGGCCTATAGGCA
GGTGGAGGACGGAGGCCTGGAGGAGCAGACCCAGAAAAGCTCGGGAACTGAGCCAGAGCCCAAGCCCTAC
AACCCCTTTGAGGAAGAAGAGGAAGAAGAAGGAGAGCCAGCCCCACCAGTACCCAGCCCATCTCTAGCCC
CACCAGTACCCAGCCCATCTCCAGCCCCACCAGTACCCAGCCCTGCGCCTGCCCCGTCAGAGGCCACCCC
CAAGTCCCTGCACCCCTGGTACGGCATCACTCCTACCAGCAGCCCCAAGACAAAGAAGCGCCCTGCCCCG
AGAGCACCCAGTGCTTCCCCACTTGCTATCCACGCCTCCCGCCTGTCACACTCAGAACCTCCTTCAGCTA
CGCCATCACCAGCCCTTAGCGTGGAGAGTCTGTCATCCGAGAGCTCCAGTCACACTGCCAATGCAGAGCC
TTTGGAGCCGCCTGCCGTACCCAAGAGCTCCTCGGATCCTGCTGTGCACGTGCCTGGTACCCCTGGCACC
TCTGGGAACTCTGTCACCCCCTCAGCCAACTCTTCCCTGTCGTCTTCTGGGGAGCTAGGGCAGCCTAGTG
GTGAACAAATGCTGCAGGCCAGGACGAAGGGCAGCGCGGGTACCCATTCTACCAAGCCCTTCAGTGGTGC
CACCCCCACCCCCTTCTTGTTGGCTGGAGACCGGAACCCTGCCCCTCCCGTGGGGAGCGCATCCCCACAG
CTGCAAATCAAGTCTTCCTGCAAGGAGAATCCTTTCAACCGGAAACCATCTCCCTCCGCGTCTCCAACTG
TAAGGAAGGCCACCAAAGGAGCCAAGCCTGTGAGGCCACCTGCCCCCGGACACGGCTTTCCACTCATCAA
ACGCAAGGTCCAGGCTGACCAGTACATTCCCGAGGAGGACATCTACGGTGAGATGGACAATATTGAGCGC
CAGCTGGATGCCCTGGAACACAGTGGGGTTCTGTTGGAGGAGAAGCTGCGTGGCGGAGCAAATGAGGGCA
GCGAGGACGACATGCTGGTGGACTGGTTCAAACTCATCCATGAGAAGCACCTACTAGTGCGGCGAGAGTC
GGAGCTCATCTATGTCTTCAAGCAGCAGAACCTGGAGCAGCGCCAGGCTGATGTGGAGTTCGAGCTCCGG
TGCCTTCTCAACAAGCCAGAAAAGGACTGGACAGATGAGGATCGGGCCAGAGAGAAGGTGCTGATGCAGG
AACTCATGACCCTCATCGAGCAGCGAGATGCCATCGTGAACTGCCTGGACGAGGACCGGCAGAGGGAAGA
GGAGGAAGACAAGATGTTGGAAACTATGATCAAGAAGAAAGATTTCCAAAGAGAGGCCGAGTCTGACAGT
AAGAAGAAAGGCAAGTTCAAGACCATAAAGGTGCTGAAGTTTCTGGGGAATAAACGAGAAGCCAAGAGCA
AGGCCCCAGGGGACAAGAGCTGA

Translation (870 aa):
MAGPRGALLAWCRRQCEGYRGVDIRDLSSSFRDGLAFCAILHRHRPDLLDFQSLSKENVFENNRLAFEVA
EKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFTSSGQAAASPPKPGKDPAPPSPTSTSPAVQPGE
EAQGDDLSPDSLSEQGKQQPPSSACAACGQRVHLVQRYLAEGRLYHRHCFRCRQCSSTLVPGSYSSGPEE
GTFVCAERCTRLGPGSRSGTRLLSQQRQQPAAAEAKDAEDNDPSLSVAAVAEADRLQASSEVQFHTPTKP
PLPSKPQELASPPGGRPTPAPRKASESSALTPPTPRPRSSLQQDGTVEQSVSSGLVNGRLQEPPVPKPRG
TPKLSERMAAPRKDPPWITLVQTEPKKKPAPQPPSSGPGPLSQAYRQVEDGGLEEQTQKSSGTEPEPKPY
NPFEEEEEEEGEPAPPVPSPSLAPPVPSPSPAPPVPSPAPAPSEATPKSLHPWYGITPTSSPKTKKRPAP
RAPSASPLAIHASRLSHSEPPSATPSPALSVESLSSESSSHTANAEPLEPPAVPKSSSDPAVHVPGTPGT
SGNSVTPSANSSLSSSGELGQPSGEQMLQARTKGSAGTHSTKPFSGATPTPFLLAGDRNPAPPVGSASPQ
LQIKSSCKENPFNRKPSPSASPTVRKATKGAKPVRPPAPGHGFPLIKRKVQADQYIPEEDIYGEMDNIER
QLDALEHSGVLLEEKLRGGANEGSEDDMLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEFELR
CLLNKPEKDWTDEDRAREKVLMQELMTLIEQRDAIVNCLDEDRQREEEEDKMLETMIKKKDFQREAESDS
KKKGKFKTIKVLKFLGNKREAKSKAPGDKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH