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Report for CCDS49792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49792.1 Public Mus musculus 16 Vwa5b2 23 108 98 CCDS HistoryNCBI Gene:328643Re-query CCDS DB by CCDS ID:49792.1Re-query CCDS DB by GeneID:328643See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096197.10 ENSMUSP00000093911.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096197.10Link to Ensembl Protein Viewer:ENSMUSP00000093911.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096197Re-query CCDS DB by Protein ID:ENSMUSP00000093911
Original member Current member NCBI NM_001144953.1 NP_001138425.1 Accepted alive Link to Nucleotide Sequence:NM_001144953.1Link to Protein Sequence:NP_001138425.1Re-query CCDS DB by Nucleotide ID:NM_001144953Re-query CCDS DB by Protein ID:NP_001138425Link to BLAST:NP_001138425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138425.1 1248 Q3UR50-1 1248 100% 0 0

Chromosomal Locations for CCDS 49792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20591162 20591300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20591380 20591550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20594180 20594399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20594567 20594724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20595320 20595451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20595696 20595820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20596175 20596330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20597020 20597130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20597223 20597431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20597513 20597624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20598088 20598273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20600628 20600799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20600887 20601200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20601548 20601737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20601836 20602189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20603848 20603985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20604066 20604146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20604222 20604451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20604537 20605085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3747 nt):
ATGCCTGGCCTGTACTGCCCCACCAGCTGGACGCCGCTGCCGCTCACCGACTCCTGCGTCCGGGCCTATG
CCAAGGGACCCTGCCTCAGCCTGCGTGCCCGGCTTACCTACCACAACCCACAGCCCCAGCCGGTGGAAGG
CGTGTTCGTGTACCCTCTGGCTGAGGCGGAGGTGGTATCTGGCTTCGAGGCCGAGGCGGCCGGACGGCGC
GTCTCCTTCCAGTTGCATAGCCGGCGCCGATCACAGGCCGCCTGCTGTCGCGCTCTGGGCCCGGGACTAG
GGACCTCTACACCCCGCCGCTGCGCACAGGGTCATCTTGTCTTGAATCTGGCCCAAGCCCGGTCCACACT
GGTGTTGCCCACTGGCCTTGTGGCTGCAGCTGGTACCATGACAGTGACCCTGTGCAGCAGCCGGGAGTTG
CCCTCCAGGCCTGATGGGGTGATGCATGTGGCCCTGCCCACTGTGTTCACCCCACTGGCCCAGCCAAACC
TGCCAGGGTCCCCCAGGTCTCCGGGGCTCTGTGACGACAGCCCCACCAGCTGCTTCGGGGTAGGCAGCCC
TGAGGAGGAAAGGCCGACCTGGGAGCAACCAACTGCCACTCCGGACGTGTTCTCAGGCCCTGCCCGCTGT
CCTGCTCCGTATACCTTCTCTTTCGAGATGCTAGTGACCGGACCATGTCTGTTGGCAGGCCTGGAGAGCC
CCTCTCATGCTCTGCGTGCAGATGCCCTCCCTCATGCCAGCTCTGCAGCAACTATCCGTGTCACCCTGGC
AGAGGGCCACCAGTGTGATCGGGCCTTGGAGATCCTCTTGCACCCCAGTGAGCCCCATCAGCCACACTTG
ATGCTGGAGACTGGCAGCTTGAGTTCAGCAGAATATGAGGCCCAAGTGAGGGCCCGCCATGACTTCCAGA
GGTTGCAGCAAAGAGACAGTGGTGGGGAACGGCAGGTCTGGTTCCTGCAGCGACGGTTCCATAAGGACAT
CTTGCTGAACCCTGTGCTGGTGCTGAACTTCTGCCCAGACCTGAGCTCCAAGCCTGGACACCTGAATGCA
GCTACCCGGGAGCTCCTCTTCCTGTTAGATGGCAGTGGTGCAGGACACAAGGATGCCATTGTTTTGGCTG
TAAAATCCCTCCCAGCTCAGACTCTAGTCAACCTAGCCATATTTGGGACATTGGTACAGCCACTCTTCCC
AGAGAGCCGGCCTTGCAGTGATGACACTGTGCAGCTGATCTGCGAGAGCATCGAGACTCTCCAGACTGTG
AATGGTCCCCCTGATATGCTGGCTGTATTGGATTGGGCCTTAGGGCAGCCCCAGCACAGGGCCTACCCTC
GACAGATGTTCCTGATCACTGCTGCCTCGCCAACGGCTGCCACCACTCACCAAGCCCTGGAGTTTATGAG
GTGGCACAGAGGGGCAGCCAGGTGCTTCTCCTTTGCATTGGCACCTGCCTGCCGCCAGCTGCTCCATGAC
TTGTCTGTCCTCAGCAGAGGACAGGCTTACTTCCTGAGGCCCGGGGAGAGACTTCAGCCCAAGCTGGTAC
AGGCTCTGCGGAAGGCACTGGAACCTGCTTTGAGTGACATCTCTGTGGACTGGTTTGTGCCTGATGCTGT
GGAGGCACTGCTGACACCCCGGGAGATCCCAGCTCTCTACCCTGGGGACCAGCTGCTTGGCTACTGCTCG
CTTTTCAGGGTGGATGGCTTCCGGTCCCATGCTCTAGGGGGACAAGAGCCTGGTTGGCAGAGCTTGGCCG
GTTCAGTCTTCCCATCTCCAGAGGAGGTGTTATCCGCCACCAGCCCTGGCACTGAGCCTACGCACACCAC
AGAGCCCCTGGGAACAGGCACTGTGTCAGCAGAGCTGTCGAGCCCATGGGCTGTAGGCGACTCAGAGCAG
AGTATGGAAGCTCTGACAGACCCAGTCATGGATCCTGGACCTAATCCCTCATCTGACACAGCTATATGGC
GGCGCATCTTCCAGTCCTCATACATCCGGGAGCAGTATGTGCTTACCCACTGCTCTGCCAGCCCTGAGCC
AGGCCCAGGCTCCACCTGCAGTAGCGAGTCCCCAGGTTCCCAAGGCCCTGGCTCCCCCAGTGGTAGCCGT
CCCCTGGATCCCCCTTCTCAGCAGGGCTGCCGAAGCCTGGCCTGGGTAGAACCTGCAGGCTCCCGCTCCT
GCCCCCTGCCTGTACCCCCACCATCTCCATTCAAGGTGGGAGCCATGAGCGCTGAGGTGCTGGGCCGTCG
GCAAAGAGCAGCTCTGGCTGGTCGAAGTCTCTCATCTCCCTCAGGCCGGGCAAACCCAGTCCCCGGAAGA
GCCCGGCACCCCTCTCTAGATGCAATACCAGATGGATTAGGCCCTGAGCCAGGACAACAGCTGGGTCAGG
GCCTCGATGATTCAGGAAACCTGCTCTCCCCAGCCCCCTTGGACTGGGATATGTTGATGGAACCATCTTT
CTTATTCAAGCCTGTGCCGTCCAGTGCGGAATCAGCTCCTCCAGCAGAATGTCTGCCTCCTCAGGCTCCA
CGTTGCCACGTGGTGATCCGGGCCCTGTGTGGGGAACAGCCAATGTGCTGGGAGGTGGGTGTTGGGCTGG
AAGAACTCTGGGGTCCTGGGGATGGCTCCCAGCCTGAATCACTTCCGATGAGAGAAGCTGCGTGGGATCA
GGCACTCCACCGGCTGACAGCAGCCTCTGTGGTCCAGGACAATGAACAGCTGGCTCTCCGTGGAAGAGCT
GAAACCAGGGCTGAGCAGGGCAGAGTCAGAAGGTCCTGGCTCAGAGCCATTCAGACAAGCAAGGTCAGCT
CTGCCCCATCCTGTTTTACCTGCCCTGTTGCTGTAGATGCTACCACTAGGGAGGTATTGCCTGGAGCCCT
GCAGGTGTGGAGTTCAGATCCAGCTGAGCTCTCAGGCATGTCTGCCTCTCAAGACCAGCTAGCTGCCGCT
CCTCTGTCCACAGCAGTCCACTCTAAAGGACATCAGGGAGGCTGTTCTGCAGGTGCCTGGGACCTGGACC
TAAATGACAACTCCAAGTCAGCATTGGGGGAGCCCATATCTCCTACTGGAGATCATCATGGCTTGCCCCA
CCAGCCTCCAGCCTCTTCCAGGCTCAGCCTGGGTCGTCATCGAAGACTCTGCAGCTCCAATAAGGGCCAG
ACTCATGAGAACAGCAATGACGGCAGCAACCATGACTACCTGCCTCTGGTACGACTGCAAGAGGCACCAG
GCTCCTTCCGCCTGGATGAACCCTTCTGTGCTGCTGTGTGCATTCCTCAAGAACGCCTGTGTCGAGCCTC
GCCCTTTGCCGCACACCGTGCCAGCCTCAGCCCCACCTCAGCATCATCTCCTTGGGCATTTCTGAGCCCT
GGTATTGGCCAAGGTGACAGTGCCACAGCCTCCTGCAGCCAGTCCCCCAGCTCAGGTTCTGAGGGTCCAG
GCCAGGTAGACAGTGGGAGGGGCTCAGATACTGAGGCCTCAGAAGGAATGGAAAGGCAGGACAGCTCTGA
TCTTCGTGGGCGCACTTGGGCCACAGCTGTGGCCCTGGCGTGGCTGGAACACCGCTGTGCAGCTGCCTTT
GGCGAGTGGGAACTGACAGCTTCCAAAGCTGATTGCTGGCTGAGAGCCCAACACCTGCCAGACGGACTTG
ATCTGACTGCTCTTAAAGCTGCTGCCCGGGGGCTCTTTCTGTTACTGCGACACTGGGACCAGAATCTGCA
GCTACACTTGCTGTGTTACAGCCCTTCGAATGTGTAA

Translation (1248 aa):
MPGLYCPTSWTPLPLTDSCVRAYAKGPCLSLRARLTYHNPQPQPVEGVFVYPLAEAEVVSGFEAEAAGRR
VSFQLHSRRRSQAACCRALGPGLGTSTPRRCAQGHLVLNLAQARSTLVLPTGLVAAAGTMTVTLCSSREL
PSRPDGVMHVALPTVFTPLAQPNLPGSPRSPGLCDDSPTSCFGVGSPEEERPTWEQPTATPDVFSGPARC
PAPYTFSFEMLVTGPCLLAGLESPSHALRADALPHASSAATIRVTLAEGHQCDRALEILLHPSEPHQPHL
MLETGSLSSAEYEAQVRARHDFQRLQQRDSGGERQVWFLQRRFHKDILLNPVLVLNFCPDLSSKPGHLNA
ATRELLFLLDGSGAGHKDAIVLAVKSLPAQTLVNLAIFGTLVQPLFPESRPCSDDTVQLICESIETLQTV
NGPPDMLAVLDWALGQPQHRAYPRQMFLITAASPTAATTHQALEFMRWHRGAARCFSFALAPACRQLLHD
LSVLSRGQAYFLRPGERLQPKLVQALRKALEPALSDISVDWFVPDAVEALLTPREIPALYPGDQLLGYCS
LFRVDGFRSHALGGQEPGWQSLAGSVFPSPEEVLSATSPGTEPTHTTEPLGTGTVSAELSSPWAVGDSEQ
SMEALTDPVMDPGPNPSSDTAIWRRIFQSSYIREQYVLTHCSASPEPGPGSTCSSESPGSQGPGSPSGSR
PLDPPSQQGCRSLAWVEPAGSRSCPLPVPPPSPFKVGAMSAEVLGRRQRAALAGRSLSSPSGRANPVPGR
ARHPSLDAIPDGLGPEPGQQLGQGLDDSGNLLSPAPLDWDMLMEPSFLFKPVPSSAESAPPAECLPPQAP
RCHVVIRALCGEQPMCWEVGVGLEELWGPGDGSQPESLPMREAAWDQALHRLTAASVVQDNEQLALRGRA
ETRAEQGRVRRSWLRAIQTSKVSSAPSCFTCPVAVDATTREVLPGALQVWSSDPAELSGMSASQDQLAAA
PLSTAVHSKGHQGGCSAGAWDLDLNDNSKSALGEPISPTGDHHGLPHQPPASSRLSLGRHRRLCSSNKGQ
THENSNDGSNHDYLPLVRLQEAPGSFRLDEPFCAAVCIPQERLCRASPFAAHRASLSPTSASSPWAFLSP
GIGQGDSATASCSQSPSSGSEGPGQVDSGRGSDTEASEGMERQDSSDLRGRTWATAVALAWLEHRCAAAF
GEWELTASKADCWLRAQHLPDGLDLTALKAAARGLFLLLRHWDQNLQLHLLCYSPSNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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