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Report for CCDS49856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49856.1 Public Mus musculus 16 Cd200r3 23 108 98 CCDS HistoryNCBI Gene:74603Re-query CCDS DB by CCDS ID:49856.1Re-query CCDS DB by GeneID:74603See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114611.9 ENSMUSP00000110258.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114611.9Link to Ensembl Protein Viewer:ENSMUSP00000110258.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114611Re-query CCDS DB by Protein ID:ENSMUSP00000110258
Original member Current member NCBI NM_001128132.1 NP_001121604.1 Accepted alive Link to Nucleotide Sequence:NM_001128132.1Link to Protein Sequence:NP_001121604.1Re-query CCDS DB by Nucleotide ID:NM_001128132Re-query CCDS DB by Protein ID:NP_001121604Link to BLAST:NP_001121604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121604.1 278 Q5UKY4-3 278 100% 0 0

Chromosomal Locations for CCDS 49856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44943773 44943836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44951439 44951549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44953402 44953719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44954119 44954337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44957728 44957833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44965582 44965600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGCATGCTTTGGGGAGGACTCTGGCTTTGATGTTACTCATCTTCATCACTATTTTGGTGCCTGAGTCAA
GTTGTTCAGTGAAAGGACGGGAGGAGATCCCACCGGATGATTCATTTCCTTTTTCAGATGATAATATCTT
CCCTGATGGAGTGGGCGTCACCATGGAGATTGAGATTATCACTCCAGTGTCTGTACAGATAGGTATCAAG
GCTCAGCTTTTCTGTCATCCTAGTCCATCAAAAGAAGCAACACTTAGAATATGGGAAATAACTCCCAGAG
ACTGGCCTTCCTGCAGACTACCCTACAGAGCAGAGTTGCAGCAGATCAGTAAAAAAATCTGTACTGAGAG
AGGAACCACTAGGGTCCCTGCACATCACCAGAGTTCTGACCTTCCCATCAAATCAATGGCCCTCAAGCAT
GATGGGCATTACTCATGTCGGATAGAAACAACAGATGGGATTTTCCAAGAGAGACATAGCATCCAAGTGC
CAGGGGAAAATAGAACTGTAGTTTGTGAGGCAATTGCAAGCAAGCCTGCTATGCAGATCTTGTGGACTCC
AGATGAGGACTGTGTCACTAAGAGTAAATCACACAATGACACCATGATTGTCAGGAGCAAGTGCCACAGG
GAGAAAAACAATGGCCACAGTGTGTTCTGCTTTATCTCCCATTTGACTGATAACTGGATTCTCTCCATGG
AACAGAATCGAGGTACAACCAGCATCCTGCCTTCCTTGCTGAGCATTCTCTATGTGAAACTGGCTGTAAC
TGTTCTCATCGTAGGATTTGCTTTTTTCCAGAAGAGAAATTATTTCAGAGTGCCAGAAGGCTCCTGA

Translation (278 aa):
MHALGRTLALMLLIFITILVPESSCSVKGREEIPPDDSFPFSDDNIFPDGVGVTMEIEIITPVSVQIGIK
AQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKKICTERGTTRVPAHHQSSDLPIKSMALKH
DGHYSCRIETTDGIFQERHSIQVPGENRTVVCEAIASKPAMQILWTPDEDCVTKSKSHNDTMIVRSKCHR
EKNNGHSVFCFISHLTDNWILSMEQNRGTTSILPSLLSILYVKLAVTVLIVGFAFFQKRNYFRVPEGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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