NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50110.1 Public Mus musculus 17 9130008F23Rik 23 108 98 CCDS HistoryNCBI Gene:71583Re-query CCDS DB by CCDS ID:50110.1Re-query CCDS DB by GeneID:71583See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 50110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068258.2 ENSMUSP00000069779.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068258.2Link to Ensembl Protein Viewer:ENSMUSP00000069779.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000068258Re-query CCDS DB by Protein ID:ENSMUSP00000069779
Original member Current member EBI ENSMUST00000233122.1 ENSMUSP00000156475.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233122.1Link to Ensembl Protein Viewer:ENSMUSP00000156475.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233122Re-query CCDS DB by Protein ID:ENSMUSP00000156475
Original member Current member EBI ENSMUST00000233871.1 ENSMUSP00000156735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233871.1Link to Ensembl Protein Viewer:ENSMUSP00000156735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233871Re-query CCDS DB by Protein ID:ENSMUSP00000156735
Original member Current member NCBI NM_027834.3 NP_082110.1 Accepted alive Link to Nucleotide Sequence:NM_027834.3Link to Protein Sequence:NP_082110.1Re-query CCDS DB by Nucleotide ID:NM_027834Re-query CCDS DB by Protein ID:NP_082110Link to BLAST:NP_082110.1

Chromosomal Locations for CCDS 50110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40879991 40880536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGAACTATCTACCCTCCGGGATGGAGCTGGGCAGACCCCAAGGGCGCTCTGAGTGCTCTCCGCGCCGGG
AGGGGTGTGGGCCACCCTTGGATTCTGGCTCCCCTAATCCTGCGCTGGCGGAGGCGGGAAGTGCCCAATC
AATAGCAAGTGGGAACTTGAGAAAGCAGAAGGGAAAGAATTTGGATTGCCAGTCCTGGGTCAGAGAGAAA
GTGCTCTTTCTTCTGCACCCGGAGAGGTGGTTGGGAACACAGGCGGACTCTGCTTGCGCAGGGCTGGTGG
ACAGCGAGAACCTTCCCCCGACGATTGGAGACCACTACGATTCCAAACGGAAACCAAAGCTTTCCCGCAG
GCGCATTGCCACGGCCCCGGGGGCCCAGCCCGAGGACCCCGAAAACACACCCAGGTCCCTGTTGGTGCGG
GTCGTGGATTACCAGGTGACACAGGAGGTGCTGTGGACCGCATGGACCAAGGGGAGTATGACCACGAGGA
CCGAGGAGCGTTCTGTGACCGCAGTCACCTTTCGGACACAGAGGGAGAGGGAGTGA

Translation (181 aa):
MNYLPSGMELGRPQGRSECSPRREGCGPPLDSGSPNPALAEAGSAQSIASGNLRKQKGKNLDCQSWVREK
VLFLLHPERWLGTQADSACAGLVDSENLPPTIGDHYDSKRKPKLSRRRIATAPGAQPEDPENTPRSLLVR
VVDYQVTQEVLWTAWTKGSMTTRTEERSVTAVTFRTQRERE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH