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Report for CCDS50174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50174.1 Public Mus musculus 17 Tgif1 23 108 98 CCDS HistoryNCBI Gene:21815Re-query CCDS DB by CCDS ID:50174.1Re-query CCDS DB by GeneID:21815See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118283.7 ENSMUSP00000113192.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118283.7Link to Ensembl Protein Viewer:ENSMUSP00000113192.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118283Re-query CCDS DB by Protein ID:ENSMUSP00000113192
Original member Current member EBI ENSMUST00000172229.7 ENSMUSP00000127139.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172229.7Link to Ensembl Protein Viewer:ENSMUSP00000127139.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172229Re-query CCDS DB by Protein ID:ENSMUSP00000127139
Original member Current member NCBI NM_001164074.1 NP_001157546.1 Accepted alive Link to Nucleotide Sequence:NM_001164074.1Link to Protein Sequence:NP_001157546.1Re-query CCDS DB by Nucleotide ID:NM_001164074Re-query CCDS DB by Protein ID:NP_001157546Link to BLAST:NP_001157546.1
Original member Current member NCBI NM_001164076.1 NP_001157548.1 Accepted alive Link to Nucleotide Sequence:NM_001164076.1Link to Protein Sequence:NP_001157548.1Re-query CCDS DB by Nucleotide ID:NM_001164076Re-query CCDS DB by Protein ID:NP_001157548Link to BLAST:NP_001157548.1
Original member Current member NCBI NM_001164077.1 NP_001157549.1 Accepted alive Link to Nucleotide Sequence:NM_001164077.1Link to Protein Sequence:NP_001157549.1Re-query CCDS DB by Nucleotide ID:NM_001164077Re-query CCDS DB by Protein ID:NP_001157549Link to BLAST:NP_001157549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157546.1 252 P70284-2 252 100% 0 0
NP_001157548.1 252 P70284-2 252 100% 0 0
NP_001157549.1 252 P70284-2 252 100% 0 0

Chromosomal Locations for CCDS 50174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70844697 70845272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70846172 70846354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGGACAGTCCCCTGGACCTTTCCTCATCAGCAGCCTCTGGCAAGAGAAGGAGGAGAGGCAATCTGCCCA
AGGAGTCAGTCCAGATTCTGCGAGACTGGCTGTATGAACACAGATACAACGCCTATCCCTCAGAGCAAGA
GAAAGCACTGCTGTCCCAGCAGACACACCTGTCCACACTACAGGTCTGTAACTGGTTCATCAACGCCCGC
CGCAGGCTCCTTCCTGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAGTTCACGATTTCCCGCCGTG
GGGCCAAGATTTCAGAAGCTAGCTCTATTGAAGCTGCAATGGGTATCAAAAACTTCATGCCAACTCTAGA
AGAGAGCCCATTTCATTCCTGCGTAGTTGGACCCAACCCAACCCTAGGGAGACCAGTGTCTCCCAAACCT
CCCTCCCCAGGATCCATTTTGGCTCGCCCGTCAGTGATCTGCCATACCACTGTGACTGCATTGAAGGATG
GGCCTTTCTCTCTCTGTCAGCCGATTGGTGTGGGACAGAGTACAGATGTACCGCAAATAGCACCCAGCAA
CTTTACAGACACCTCTCTCGTGTACCCAGAGGACACTTGCAAATCTGGACCCAGTCCAAACCCTCAGAGT
GGTCTTTTCAACACTCCTCCCCCTACTCCACCAGACCTCAACCAGGATTTTAGTGGATTCCAGCTTCTAG
TGGATGTTGCACTCAAACGAGCGGCAGAGATGGAGCTTCAGGCCAAACTCACAGCTTAA

Translation (252 aa):
MDSPLDLSSSAASGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINAR
RRLLPDMLRKDGKDPNQFTISRRGAKISEASSIEAAMGIKNFMPTLEESPFHSCVVGPNPTLGRPVSPKP
PSPGSILARPSVICHTTVTALKDGPFSLCQPIGVGQSTDVPQIAPSNFTDTSLVYPEDTCKSGPSPNPQS
GLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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