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Report for CCDS50199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50199.1 Public Mus musculus 17 Ppm1b 23 108 98 CCDS HistoryNCBI Gene:19043Re-query CCDS DB by CCDS ID:50199.1Re-query CCDS DB by GeneID:19043See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080217.13 ENSMUSP00000079107.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080217.13Link to Ensembl Protein Viewer:ENSMUSP00000079107.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080217Re-query CCDS DB by Protein ID:ENSMUSP00000079107
Original member NCBI NM_001159496.1 NP_001152968.1 Updated not alive Link to Nucleotide Sequence:NM_001159496.1Link to Protein Sequence:NP_001152968.1Re-query CCDS DB by Nucleotide ID:NM_001159496Re-query CCDS DB by Protein ID:NP_001152968
Current member NCBI NM_001159496.2 NP_001152968.1 Accepted alive Link to Nucleotide Sequence:NM_001159496.2Link to Protein Sequence:NP_001152968.1Re-query CCDS DB by Nucleotide ID:NM_001159496Re-query CCDS DB by Protein ID:NP_001152968Link to BLAST:NP_001152968.1

Chromosomal Locations for CCDS 50199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 84993694 84994539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85003266 85003383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85004912 85005023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85005509 85005566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85013566 85013865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGGTGCATTTTTGGATAAACCCAAAACTGAAAAGCACAATGCTCACGGTGCTGGGAATGGTCTGCGTT
ATGGCCTGAGCAGTATGCAAGGATGGAGAGTAGAAATGGAAGATGCACACACAGCTGTTGTGGGTATTCC
TCACGGCTTGGACAACTGGTCGTTTTTTGCAGTTTATGACGGTCATGCTGGATCCCGAGTGGCAAATTAC
TGTTCAACACATCTATTAGAACACATCACCACCAATGAAGACTTCAGGGCAGCTGACAAATCAGGCTCTG
CTCTCGAGCCTTCAGTAGAAAGTGTGAAGACTGGTATCAGGACTGGCTTTTTGAAAATTGATGAATATAT
GCGTAACTTCTCAGACCTGAGGAACGGGATGGACAGGAGCGGCTCGACTGCAGTGGGCGTGATGGTCTCC
CCTACACACATGTACTTCATCAACTGTGGTGACTCTCGAGCTGTTCTGTGTAGGAACGGACAGGTCTGCT
TTTCTACCCAGGATCACAAACCTTGTAATCCAGTGGAGAAGGAGCGCATCCAAAACGCAGGAGGCAGTGT
GATGATCCAGCGTGTGAACGGCTCACTAGCAGTGTCTCGGGCTCTGGGGGACTATGACTACAAGTGTGTG
GATGGCAAGGGCCCTACAGAGCAGCTTGTTTCTCCAGAGCCTGAGGTTTATGAGATTGTGAGAGCAGAAG
AGGATGAGTTTGTCGTCTTGGCCTGTGATGGGATCTGGGATGTGATGAGCAATGAGGAGCTCTGTGAGTT
TGTTAAGTCTAGGCTTGAGGTGTCGGACGACCTGGAGAATGTGTGCAATTGGGTAGTGGACACTTGTTTA
CATAAGGGAAGTCGAGATAACATGAGTGTTGTATTAGTTTGCTTTTCAAATGCCCCCAAGGTCTCAGAGG
AAGCCGTGAAGAGAGATTCAGAGTTGGATAAGCACTTGGAATCACGGGTTGAAGAAATCATGCAGAAGTC
TGGGGAGGAAGGAATGCCTGATCTTGCCCATGTGATGCGCATTTTGTCTGCAGAAAATATCCCGAATTTA
CCTCCCGGGGGAGGTCTCGCTGGCAAGCGCCATGTTATTGAAGCTGTTTATAGTAGACTTAATCCACACA
AAGACAATGATGGGGCCTCCGATGAAGCAGAGGAAGGTGGATCACAGGGGAAATTGGTGGAAGCTCTCAG
GCAAATGAGAGTTAACCATAGGGGAAACTACCGACAGCTGCTGGAGGAGATGCTGACTAGTTACAGGCTA
GCTAAAGTAGAGGGAGAAGAGAGCCCGGCTGACCCAGCGGCTGCAGCTGCTTCTTCGAACAGTGATGGTG
GAAACCCAGTGGCAATGCAGGAGAGAGACACTGAGGGTGGTCCTGCTGGCCTAGACAGCCGTAATGAAGA
TGCAGGGACAAAGAGGAGTGCTGAAAATATATGA

Translation (477 aa):
MGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLDNWSFFAVYDGHAGSRVANY
CSTHLLEHITTNEDFRAADKSGSALEPSVESVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMVS
PTHMYFINCGDSRAVLCRNGQVCFSTQDHKPCNPVEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCV
DGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCL
HKGSRDNMSVVLVCFSNAPKVSEEAVKRDSELDKHLESRVEEIMQKSGEEGMPDLAHVMRILSAENIPNL
PPGGGLAGKRHVIEAVYSRLNPHKDNDGASDEAEEGGSQGKLVEALRQMRVNHRGNYRQLLEEMLTSYRL
AKVEGEESPADPAAAAASSNSDGGNPVAMQERDTEGGPAGLDSRNEDAGTKRSAENI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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