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Report for CCDS50397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50397.1 Public Mus musculus 19 Pfpl 23 108 98 CCDS HistoryNCBI Gene:56093Re-query CCDS DB by CCDS ID:50397.1Re-query CCDS DB by GeneID:56093See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168148.1 ENSMUSP00000126346.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168148.1Link to Ensembl Protein Viewer:ENSMUSP00000126346.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168148Re-query CCDS DB by Protein ID:ENSMUSP00000126346
Original member NCBI NM_019540.2 NP_062413.2 Updated not alive Link to Nucleotide Sequence:NM_019540.2Link to Protein Sequence:NP_062413.2Re-query CCDS DB by Nucleotide ID:NM_019540Re-query CCDS DB by Protein ID:NP_062413
Current member NCBI NM_019540.3 NP_062413.2 Accepted alive Link to Nucleotide Sequence:NM_019540.3Link to Protein Sequence:NP_062413.2Re-query CCDS DB by Nucleotide ID:NM_019540Re-query CCDS DB by Protein ID:NP_062413Link to BLAST:NP_062413.2

Chromosomal Locations for CCDS 50397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12428387 12430495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGAACAGCTTCATTGTCACAGTCCTTATCTGGACCACAGTGGCATATGCTGAAGAGGAGAAGGCACTTA
AAGAGATCCATGAGTATGGTTTCCAAAAGTGCCAGAATGCTCTGAATCTACCTGTTTTGGAAGTGCTACC
TGGAGGAGGCTGGGATAATCTGAGGAATATGGACATGGGGCAAGTGATGGACTTGACATACAACAACTGT
AAGACCACAGAAGACGGACAGTACATCATCCCTGATGATGTCTTTACTATTCCTCAGAAAGAGAGCAACC
TGGAGATGAACTCAGAAATCCTGGATTCCTGGGAGAATTACCGAAGCACTACTTCCTTTTCCATTAACTT
GAATCTCGATTATCGTCCCAGAGTCAACGGCAAGTTCTCTTCTGAGTTCCAAAGGATAAAGACCACTCAA
GTGAGAGACCAGGCTGTAACCACACGAGCTCAGGTGAGAAATTTGGTCTACACAGTGAAAGCCAACCCAA
ATGCAGAACTCAACTTGGGGTTTAAGAAGGAGCTCATGGAAATCTGTGACCGTCTAGAGAAAAACCAGAC
GAAGATGGCCACCTACCTGGCAGAACTCTTGATCCTCAACTATGGCACACACATAATCACTAGTGTGGAT
GCTGGGGCTACACTGGTTCAGGAGGATCATGTAAAGTCCTCCTATCTTAAGAACAATAAGGGAAACCGTG
CTGCTGTGGCTGCATCTGCTGGATTTACTTTCGCAAAGGTTGTGAACTTCAAAATAGAGACAGGCTTTGA
GTATCAAAATAACTTGGCCACAGGCTATCTTCAAAACAGAACCGGTTCTAGGGTTCAGAGTATTGGAGGA
ATTCCCTTCTACCCAGGGATGACCATCGAAACCTGGCAGAAGGGCATCATTAACCACCTGGTGGCAGTGG
ACCGTGCTGGCTTGCCTCTGCATTTCTTTATCAAACCTGAAAAGCTTCCTGCTTTTCCACGCCACTTGGT
GGAGCAACTGGCAAAGACAGTGGAAACTGCTGCGGAAAGCTATTACAACTTTAATACATACCCAGGCTGC
ACAAATATCAACTCCCCCAACTTTGATTTTCAAGCCAATACAGATGATGGCTCTTGTGATGGTAAACTGG
TCAACGCTCCCTTTGGAGGGGTTTATCAGTTGTGCCGTCAATTATCAGGGCATGATTACGATGACATGTG
CCTAGATTTCCATCAGAAGAATCCACTTACTGGTGATTTCTCTTGTCCGCCTGACTACACCCCTGTCCAT
CTGCTATCTCAGACCCATGAGAAGGGTTATACTGGAATGGAATGTAGAGATAAATGTATCCTCAAGATAT
TCTGTCGTACATCGTGTAAAGATGAGTTCAGAGTGGCCAAGGCTGAAGTTAGCTCTTATTGGTGTGCGGC
CAGTAGCCAAGTACCAGAAAACTCAGGAATTCTCTTTGGAGGAGTCTTCACTGACAAGAGCATCAACCCT
ATGACAAATGAACCATCGTGCCCAACCAGTTACTTTCCTCTGAAGCTGTTTGAGAACGTCAAGGTATGTG
TTTCTCTGGATCATGAGTTGGGGCCCAAATATTCAGTCCCCTTTGGTGGGTTTTTTAGCTGCACAAAAGG
GAACCCCTTGTATGGTTCTTTCACATCTGGAGACTTAGAGAAATCATTTCTGCCAAAGTGTCCCGGGGGC
TTCAGCCAACAGCTCGCTGCGATCATTGATGGATGCCAAGTGTCCTACTGTGTCAAGGCTGGAGTCTTTA
CACGAGCATCTCTGGCTCCTGCTAGGCTCCCACCTTACACTCAGCTACCTATGAGTCAGCTTTCCACTGA
CTCAGTTGAGATGACAGGGGAGAGTCCCATATCCTGGGTTAAGGACCCCTATACCCTGCAATGGAACCTA
GAGGAGTCATCAAAAAGTGGTAGACTATCAGGAGGATCAACTGCTGCAATCACAATTGTGGTTATCCTAG
CATTAGGAGTTTTAACTGCTATGGCCATCTATGGCAACCGGAGGTTTAAGAAGAATAAACCCAATGGACT
TCCAAGACAACAGGCATTGCTTCCTTTTCCAAGAGTTAGAGTCTTTCCTGATGGAGTGCAGGATCCAAAT
CCAGCTTAA

Translation (702 aa):
MNSFIVTVLIWTTVAYAEEEKALKEIHEYGFQKCQNALNLPVLEVLPGGGWDNLRNMDMGQVMDLTYNNC
KTTEDGQYIIPDDVFTIPQKESNLEMNSEILDSWENYRSTTSFSINLNLDYRPRVNGKFSSEFQRIKTTQ
VRDQAVTTRAQVRNLVYTVKANPNAELNLGFKKELMEICDRLEKNQTKMATYLAELLILNYGTHIITSVD
AGATLVQEDHVKSSYLKNNKGNRAAVAASAGFTFAKVVNFKIETGFEYQNNLATGYLQNRTGSRVQSIGG
IPFYPGMTIETWQKGIINHLVAVDRAGLPLHFFIKPEKLPAFPRHLVEQLAKTVETAAESYYNFNTYPGC
TNINSPNFDFQANTDDGSCDGKLVNAPFGGVYQLCRQLSGHDYDDMCLDFHQKNPLTGDFSCPPDYTPVH
LLSQTHEKGYTGMECRDKCILKIFCRTSCKDEFRVAKAEVSSYWCAASSQVPENSGILFGGVFTDKSINP
MTNEPSCPTSYFPLKLFENVKVCVSLDHELGPKYSVPFGGFFSCTKGNPLYGSFTSGDLEKSFLPKCPGG
FSQQLAAIIDGCQVSYCVKAGVFTRASLAPARLPPYTQLPMSQLSTDSVEMTGESPISWVKDPYTLQWNL
EESSKSGRLSGGSTAAITIVVILALGVLTAMAIYGNRRFKKNKPNGLPRQQALLPFPRVRVFPDGVQDPN
PA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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