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Report for CCDS50421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50421.1 Public Mus musculus 19 Ifit1bl1 23 108 98 CCDS HistoryNCBI Gene:667373Re-query CCDS DB by CCDS ID:50421.1Re-query CCDS DB by GeneID:667373See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112467.1 ENSMUSP00000108086.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112467.1Link to Ensembl Protein Viewer:ENSMUSP00000108086.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112467Re-query CCDS DB by Protein ID:ENSMUSP00000108086
Original member Current member NCBI NM_001110517.1 NP_001103987.1 Accepted alive Link to Nucleotide Sequence:NM_001110517.1Link to Protein Sequence:NP_001103987.1Re-query CCDS DB by Nucleotide ID:NM_001110517Re-query CCDS DB by Protein ID:NP_001103987Link to BLAST:NP_001103987.1

Chromosomal Locations for CCDS 50421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34593643 34595023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34599268 34599299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGAGCAACTTCTGAGTCCCAGCAACATGAGTGCAAAATCTCATAGTTGTCTCATCTATGACAGCCTGG
TTGAGCTGAGATGCCATTTCACATGGAAGTTGGTTATAGAAAAGGTTGACATGCCTGATTTGGAAGTAAG
AATCTCAGAGACTGAGTTCTTTGATGCCAGCTACAGCATCGGGATGCACAACCTCCTGGCCTACGTGAGG
CACCTGAAAGGCCAGCAGGAGGAAGCCCTGCAGAGCTTGAAAGAAGCTGAAGCCTTGATCCAGAGCGAGC
AGTTGAGCAAGAGAAGGCTGGTGACCTGGGGCAACTGTGCCTGGCTGCATTACCACAGGGGCAGCTTGGC
AGAAGCCCAGGTCTACCTGGACAAGGTGGAGAAGGTGTGCAAGGAATTTTCAAGTCCCTTCCAATACAGG
CTGGAGTGTGCTGAGATGGACTGTGAGGAAGGCTGGGCCTTGTTGAAGTGTGGCATACAAAATTATAAAG
GAGCCATGGCCTGCTTTGCAAAGGCTCTGAAAGTGGAGCCAGAAAACCCTGAGTACAATGCTGGCTATGC
AGTCGTAGCCTATCGCCTGGATCACATTGATGGCACTTCGCTCCAACATTTACAGAAGGCTGTCAGCGTA
AAACCAGAAGATCCATACCTTAAAGTTCTCCTTGCCCTAAAGCTTCAGGATTTACACAAACTAGAAGAAG
CAGAAAAACACATTGAAGAAACTCTGCCCAGGATATCCTCGCAGCCCTATGTCTTTGGATATGTAGCCAA
ATTTTACCGAAGGAAAGGATTGGTGAAAGAAGCTCTTGAGTTCCTTGGCAGAGCCTTGCAGAAACAACCT
TGCTCCACCTTCTTGCATTTCCAGATTGGCCTTTGCCATAAGAAACGACTGATTCAAATAAAGAAAGCTT
CAAACATGCAACCAAGAGGGGAAGATAGAAAAAGAGCAGACCAATCCATCCATTTGGCTATATGTCATTT
TAAACGGACTTTAGAACTGAAACCCACATATGTGATGGCATATGTTACTCTGGCTGAAATGTACATTGAG
AAAAATCAACTAAAAGAAGCAGAGGACAATTTTCAGAAATTGTTGAACATGAGTAACTTGGAAGATCATA
TTCAGCAAGAGATTCACTTCCGGTATGGCAACTTCCAACAATACTATAAGAAATCAGAAGAGGCAGCCAT
CACACATTACTTAAAAGGCCTAAAAATAGAGGTAACTTCTCACTACAGGGATAAACCTCTCAAGGCTTTG
GAGAAACTGGCTAAAAGACGCAAGGAAGATCATGTCCTGGAAAACTTGGGCCTACTTGGGTTTGTCTACA
AACTGAAAGGGAACACAAGTGAAGCCATGTCATGCTATGAGAGGGCCCTGAGGCTCACAGGAGCAGTGAA
CCCTGAGTTTTGA

Translation (470 aa):
MEQLLSPSNMSAKSHSCLIYDSLVELRCHFTWKLVIEKVDMPDLEVRISETEFFDASYSIGMHNLLAYVR
HLKGQQEEALQSLKEAEALIQSEQLSKRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFQYR
LECAEMDCEEGWALLKCGIQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGTSLQHLQKAVSV
KPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQP
CSTFLHFQIGLCHKKRLIQIKKASNMQPRGEDRKRADQSIHLAICHFKRTLELKPTYVMAYVTLAEMYIE
KNQLKEAEDNFQKLLNMSNLEDHIQQEIHFRYGNFQQYYKKSEEAAITHYLKGLKIEVTSHYRDKPLKAL
EKLAKRRKEDHVLENLGLLGFVYKLKGNTSEAMSCYERALRLTGAVNPEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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