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Report for CCDS50595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50595.1 Public Mus musculus 2 Cobll1 23 108 98 CCDS HistoryNCBI Gene:319876Re-query CCDS DB by CCDS ID:50595.1Re-query CCDS DB by GeneID:319876See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090896.9 ENSMUSP00000088412.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090896.9Link to Ensembl Protein Viewer:ENSMUSP00000088412.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090896Re-query CCDS DB by Protein ID:ENSMUSP00000088412
Original member Current member NCBI NM_027225.2 NP_081501.1 Accepted alive Link to Nucleotide Sequence:NM_027225.2Link to Protein Sequence:NP_081501.1Re-query CCDS DB by Nucleotide ID:NM_027225Re-query CCDS DB by Protein ID:NP_081501Link to BLAST:NP_081501.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081501.1 1203 Q3UMF0-4 1203 100% 0 0

Chromosomal Locations for CCDS 50595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 65089471 65089557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65095688 65095864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65097633 65099392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65102069 65102166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65103160 65103394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65107012 65107086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65107758 65107917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65125893 65126117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65126208 65126305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65133579 65133807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65136345 65136546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65150979 65151167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65238363 65238439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3612 nt):
ATGGACCGCAGCGTCCCGGATCCCCTACCCCGCAGCGCGCCCCGCACCCCCGCCATGCAGCCCGCGGGCT
CCGCAGGCAGGAAAACAAAAGGGAAGGCGCCTCTTCCTCCGGCCGAGACGAAGGGCACTGATGTCTCTTC
TGCTGAAGACCCTGTAGAATCTACTGCTGTCGTCACAGAGCAACAAGACAATATGATAGATAAAGATATT
GAGCTCTCAGTGGTCCTGCCGGGAGATATCCTCAAGTCTACTACTGTTCATGGCAGTAAGCCAATGATGG
ACTTGCTCGTGTTCCTCTGTGCTCAGTATCACTTAAATCCGTCAAGTCACACAATTGATTTGCTCTCTGC
TGAAGAGAACCTTATCAAATTTAAGCCAAACACACCAATAGGAATGCTGGATGTAGAGAAGGTAATTTTA
AAGCCAAAATCTCTGGATAAGAAAAAGCCTACACCTATAATCCCAGAGAAAACTGTGAGAGTAGTGATCA
ACTTTAAGAAAACACAGAAGACCATAGTGAGAGTTAGTCCCCACGCACCCCTTCAAGATCTTGCTCCCAT
CATATGCAGTAAATGTGAGTTTGATCCGTTGCATACCGTGCTGTTGAAGGATTACCAGGCTCAGGAGCCC
CTCGACTTGACAAAATCTCTTAATGACTTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAGAGT
CCTGCCAAATATCACACAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGTTTTTTCCA
ACGCAGCAAGAAAAAGCGAGAGCAAACTGCCAGTGCTCCTGCGACCCCACTAGTGAGCAAGCATCGTCCA
TCTTTCACGAGGTCCAACACCATTTCCAAACCGTACATTTCCAATACCCTGCCCTCGGATGCACCCAAGA
AGAGACGTGCCCCACTGCCACCGATGCCCACATCCCAGGGTGCTGCTCAAGGCCAGGAGAGACGAGCGTC
TTGTGTGGAGAGATCCACCAGTGTGGACGACACAGATAAGAGTTCCTCTGAAGCGATCATGGTGAGGACA
GGATCACTGCAGCTCAGCAGCACGTCGATAGGAACTTCATCTCTGAAGAGAACGAAGCGAAAAGCACCTG
CCCCACCTTCGAAAACCCCCCTGGCTCAGACTGATGAAAGGAACTCTGCAATGGCTCATGGCCTACCTTT
GGAAGATGGGATTGCTCCAGACAGCATGTTGGAACTGAGCTCTCCCGAGGGAATGTCCACCCCAGCTGGT
GTAAGCTCTGATTACAGTCTTGAGGAGATAGATGAAAAGGAAGAACTCAGCGAGGCATCTAAAGATCCGG
CTGGAAGTATTTCTGTGAAGTCGCCTGACATTGCTTCAGCATCGACTGATATGAGAATTACAGTGGAGAA
GGATCCTGATTCAGCCCTCGGCATCAGTGATGGAGAGACCTCTCCAAGCTCCAAGGGAAAAACTCAAGAA
GGCAGAAGCACAGAGGGGCAAGGGCCGTATCATCCTGTTGTAGGCCATATAGGCAATGAGGACAGAGTAT
CTGACAGTATAAAAGACATGAAGACACTGGGCCCAAACCAGGAGAGTGTAGTTCAAAATGAAATCATGGT
CTGTGCCACAAGCACAGATTATGTGAAAAACAGACCGGGGAAAATGGAAACCACCATAGAAGGCGAAGGC
GAAGCTCTGAAGAAAGCCAGCGACATGGAAACTGATAGATTGTCAGGCTCTCCTGCATGTAGAATGGACA
ATGTTAAAAGTTCGAGGGAAAATCATCTAACAGCATCGCCAGGACCAGATCAAAAATTGAATCAACCAGG
TGTAGAGAAGACGAAAATGCAGGATGCAGCAATTCAGGCCACCCCTGCCCGCGGCACTTTTGATGGGAAT
CACGAAGTCAGTAATTCATCTGACCCCAGGGCTGATGAGACTGTGCAGACTTCGGATGGCAGCATATCAG
CTCAGCACTCCTCTGCAAGTCTCCAGGATTCTGTAAATGCCTCAAGAGAATTCAGGAGTCAGGGCACCTC
AACTTATGTACAAGATAGACTCCCTGAGAAAGAGCCAGCTTGTACATATGGGAACAATGTCCCTTTGTCA
CCTGTAGATGGAAGTAATAAGAATCCAGCTGCTTCTTACCTAAAGAACTTTCCACTTTATAGGCAAGACT
CCAACCCCAAGCCAAAACCGTCAAATGAAATCACGAGAGAGTATATACCTAAAATTGGAATGACTACTTA
TAAAATAGTACCTCCGAAATCCCTGGAAATGGCGAAAGACTGGGAATCAGAAGCAATGGGGAGGAAAGAT
GACCAAAAGATGCTCCCTGTAGGGCAGAGGCATACGATTGAGAATATGACAGAAACTTCCATGCAAACAG
AAGTCCCTGCTACTTCTAAAAGCTCACAGCAGCCTCAGCCTGACCTTAAACCAAAGCCCAGCTCAGGAAC
AGAGCGTCATTTGCACAGGACTTTGAGCTCACCAACTGGTACCGAGACGAACCCTCCCAAAGCACCCAGA
GTGACTACAGACACTGGCACCATTCCTTTTGCGCCAAATTTGGAAGATATAAACAATATTTTGGAGTCAA
AATTTAGATCCCGAGCTTCAAATCCCCAGGCCAAACCAAGTTCATTCTTTTTGCAGATGCAAAAGAGAGC
ATCAGGCCACTATGTGACATCTGCAGCTGCTAAGAGCGTCCACACTGCCCCTGGGCCTGCCCCTAAAGAG
CCAACAATCAAGGAGGTGCAGAGGGACCCACAGCTTTCTCCAGAACAGCATCCTTCTTCCTTAAGTGAAA
GGACTCACTCTGCTCCGCTGCCCAATATTTCAAAAGCTGATGATGATATAATTCAGAAGCCTGCCGAGAC
CTCTCCTCCTCCTGTAGCTCCCAAACCAATGACTCTTCGTGCCGAGACCTCTCCTCCTCCTGTATTTCCC
AAACCAATGACTCTTCCTGCTGAGACCTCTCCTCCTCCTGTATTTCCCAAACCAATGACTCTTCCTGCCG
AGACCTCTCTTCCTCTTGTATTTCCCAAACCAATGACTCTTCGAGCCGAGACCTCTCCTCCTCCTGTAGC
TGCCAAGCCTGTGGCTCTCCCTGGTAGTCAGGGAACATCACTAAACCTGAAGACCTTGAAAACATTTGGG
GCCCCAAGACCATACTCCAGTTCTGGCCCCTCACCCTTTGCCCTTGCTGTGGTGAAAAGGTCACAGTCGT
TCAGTAAGGCATGCCCAGAGTCAGCCAGTGAGGGCTCCTCTGCCCTGCCTCCAGCTGCCACACAGGATGA
AAAGACACATACAGTAAACAAGCCTACGGTGGGCTCCCAACATGGTGATGGTGATAAGCAAAATAATCCT
GTACAGAATGAGCACAGTTCTCAAGTGCTGACTCCAGCTGATGGCCCATCGTTCACCCTTAAGAGACAGA
GTTCTCTAACATTCCAGAGCTCTGACCCAGAGCACGTACGACAGAGCTTGCTCACTGCAATCCGGTCTGG
AGAGGCTGCTGCCAAGTTGAAGAGAGTTACTGTTCCATCGAATACAATATCTGTGAATGGGAAGTCGGGC
CTCAGCCAGTCCATGTCCATTGACGCCCAGGACAGTCGCTAA

Translation (1203 aa):
MDRSVPDPLPRSAPRTPAMQPAGSAGRKTKGKAPLPPAETKGTDVSSAEDPVESTAVVTEQQDNMIDKDI
ELSVVLPGDILKSTTVHGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLDVEKVIL
KPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHAPLQDLAPIICSKCEFDPLHTVLLKDYQAQEP
LDLTKSLNDLGLRELYAMDISRESCQISHNPDIVKEKENKGIFSFFQRSKKKREQTASAPATPLVSKHRP
SFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGAAQGQERRASCVERSTSVDDTDKSSSEAIMVRT
GSLQLSSTSIGTSSLKRTKRKAPAPPSKTPLAQTDERNSAMAHGLPLEDGIAPDSMLELSSPEGMSTPAG
VSSDYSLEEIDEKEELSEASKDPAGSISVKSPDIASASTDMRITVEKDPDSALGISDGETSPSSKGKTQE
GRSTEGQGPYHPVVGHIGNEDRVSDSIKDMKTLGPNQESVVQNEIMVCATSTDYVKNRPGKMETTIEGEG
EALKKASDMETDRLSGSPACRMDNVKSSRENHLTASPGPDQKLNQPGVEKTKMQDAAIQATPARGTFDGN
HEVSNSSDPRADETVQTSDGSISAQHSSASLQDSVNASREFRSQGTSTYVQDRLPEKEPACTYGNNVPLS
PVDGSNKNPAASYLKNFPLYRQDSNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEMAKDWESEAMGRKD
DQKMLPVGQRHTIENMTETSMQTEVPATSKSSQQPQPDLKPKPSSGTERHLHRTLSSPTGTETNPPKAPR
VTTDTGTIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPAPKE
PTIKEVQRDPQLSPEQHPSSLSERTHSAPLPNISKADDDIIQKPAETSPPPVAPKPMTLRAETSPPPVFP
KPMTLPAETSPPPVFPKPMTLPAETSLPLVFPKPMTLRAETSPPPVAAKPVALPGSQGTSLNLKTLKTFG
APRPYSSSGPSPFALAVVKRSQSFSKACPESASEGSSALPPAATQDEKTHTVNKPTVGSQHGDGDKQNNP
VQNEHSSQVLTPADGPSFTLKRQSSLTFQSSDPEHVRQSLLTAIRSGEAAAKLKRVTVPSNTISVNGKSG
LSQSMSIDAQDSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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