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Report for CCDS50672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50672.1 Public Mus musculus 2 Zfyve19 23 108 98 CCDS HistoryNCBI Gene:72008Re-query CCDS DB by CCDS ID:50672.1Re-query CCDS DB by GeneID:72008See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102519.4 ENSMUSP00000099577.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102519.4Link to Ensembl Protein Viewer:ENSMUSP00000099577.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102519Re-query CCDS DB by Protein ID:ENSMUSP00000099577
Original member Current member NCBI NM_001164827.1 NP_001158299.1 Accepted alive Link to Nucleotide Sequence:NM_001164827.1Link to Protein Sequence:NP_001158299.1Re-query CCDS DB by Nucleotide ID:NM_001164827Re-query CCDS DB by Protein ID:NP_001158299Link to BLAST:NP_001158299.1

Chromosomal Locations for CCDS 50672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119209130 119209183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119210482 119210603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119210781 119210831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119211181 119211299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119211398 119211543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119211906 119212014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119214834 119215040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119215454 119215527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119216209 119216307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119216629 119216640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGAGAGCAGGTGCTACGGCTGTGCTGTCAAGTTCACCCTCTTCAAGAAGGAGTATGGCTGTAAGAATT
GTGGCCGAGCCTTCTGTAACGGCTGTCTTAGCTTCAGCGCTCTGGTACCCCGGGCTGGCAACACACAACA
GAAAGTCTGCAAGCAGTGCCACACAATCCTGACCAGAGGGTCTTCTGACAATGCTTCCAAGTGGTCACCA
CCTCAGAACTATAAGAAGCGTGTGGCAGCCTTGGAAGCCAAGAAAAAGTCCAGCACTTCCCATAGCCAAA
GCCTGACCCACAAAGACCAAGCCATCGCTGAGCGCCTAGCACGGCTTCGTCAGGAAAACAAGCCTAAGTC
AGTACCCTCACAAGCCGAGATAGAGGCACGGCTAGCCGCACTGAAGGATGAAGTCCAGGGCCCCATTCCT
TCCACGCAGGAGATGGAGGATCGGCTTGCAGCCTTGCAGGGCAGAGTCCCACCTTCTCACACCGTGAGAC
CGGCACACCAGGCACCAGATACCAGGACCCAGGCCCAGCAGACGCAGGATCTGCTAACACAGTTGACAGC
TGAGGTGGCTATTGATGAAAACTGCCAACCAAGAGCCTCAGCCTCTCTCCAGAATGACCTCAACAAGGGA
GCTGCGAGAAGCCAGCGCACAAATTCCCAGGGCCAGGCCAGCCAGTCTCTGGAGGAAGAGAAGTACAAGC
TGCTGGCTGAGGCAGCTGTTGAGCTACAGGAGGAGAACACCAGGCAGGAACGGATCCTGGCTCTTGCCAA
AAGATTGGCTGTACTGAAGGGACAGGACCCCAGCAGAGTGACCCTCCAGGACTATCACCTCCCAGACAGT
GATGAGGATGAAGAGACAGCCATCCAGAGAGTCATGCAGCAGCTCACTGAAGAAGCTGCCCTGGATGAGG
CAAGTGGCTTTAACATCCCTGAGAAACCAGCTCCAGGATCCCGGGCCCAACCCTGCAAGGCAGAGATGGA
GGGAGGGCCATGA

Translation (330 aa):
MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSDNASKWSP
PQNYKKRVAALEAKKKSSTSHSQSLTHKDQAIAERLARLRQENKPKSVPSQAEIEARLAALKDEVQGPIP
STQEMEDRLAALQGRVPPSHTVRPAHQAPDTRTQAQQTQDLLTQLTAEVAIDENCQPRASASLQNDLNKG
AARSQRTNSQGQASQSLEEEKYKLLAEAAVELQEENTRQERILALAKRLAVLKGQDPSRVTLQDYHLPDS
DEDEETAIQRVMQQLTEEAALDEASGFNIPEKPAPGSRAQPCKAEMEGGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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