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Report for CCDS50731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50731.1 Public Mus musculus 2 Tasp1 23 108 98 CCDS HistoryNCBI Gene:75812Re-query CCDS DB by CCDS ID:50731.1Re-query CCDS DB by GeneID:75812See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099304.3 ENSMUSP00000096907.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099304.3Link to Ensembl Protein Viewer:ENSMUSP00000096907.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099304Re-query CCDS DB by Protein ID:ENSMUSP00000096907
Original member Current member NCBI NM_001159641.2 NP_001153113.1 Accepted alive Link to Nucleotide Sequence:NM_001159641.2Link to Protein Sequence:NP_001153113.1Re-query CCDS DB by Nucleotide ID:NM_001159641Re-query CCDS DB by Protein ID:NP_001153113Link to BLAST:NP_001153113.1

Chromosomal Locations for CCDS 50731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 139834355 139834447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139857702 139857775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139883772 139883882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139947157 139947235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139951460 139951579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139977607 139977713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139985129 139985208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139996073 139996157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140008699 140008819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140042094 140042162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140048242 140048309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140057287 140057431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGATCATGGAGAAGGGGATGAATTCTGGAGAAGGACTGCCTTCCAGATCATCTCAGGCATCTGCTGCTA
AAGTAACAGTCAAGGAGTTAGAAACACAGCAGCCCTGTAAGGAGAAACGAGGGGGCTTTGTGCTGGTGCA
TGCAGGTGCAGGCTATCATTCTGAATCCAAAGCCAAGGAATATAAACATGTATGCAAACGAGCTTGTCAG
AAGGCAATTGAGAAGCTACAGGCTGGTGCTCTTGCTACAGATGCAGTGGCTGCTGCTCTGGTGGAACTTG
AGGATTCTCCTTTTACAAATGCAGGAATAGGATCTAATCTAAATCTCTTAGGAGAGATTGAATGTGATGC
CAGCATAATGGATGGAAAGTCCTTAAACTTTGGAGCCGTTGGAGCACTGAGTGGAATCAAGAATCCAGTC
TCAGTTGCTCACAGGCTCTTGTGTGAAGGGCAGAAGGGCAAGCTCTCTGCAGGCAGAATTCCTCCCTGCT
TTTTAGTTGGAGAAGGAGCCTACAGATGGGCAGTGGATCATGGGATACCCTCTTGCCCTCCTAGCACCAT
GACCACAAGATTCAGCTTAGCTGCATTTAAAAGGAACAAGAGGAAACTAGAGCTGGCAGAAAGGGTGGAA
ACAGACTTCATCCAGCTGAAGAGAAGACGACAATCAAGCGCAAAGGAAAATGACTCAGGCACTTTGGACA
CGGTGGGTGCTGTGGTCGTGGATCACGAAGGGAATGTTGCTGCTGCTGTCTCCAGTGGGGGCTTGGCCTT
GAAACATCCAGGGAGAGTTGGGCAGGCTGCTCTTTATGGATGTGGCTGCTGGGCTGAGAATACTGGCGCT
CAGAACCCCTACTCCACAGCTGTGAGTACCTCAGGTTCACCTTTCCTTGCCTGTGAAGATGGCGTGCTCG
GTGGAGTGATCGTTCTCCGGTCATGCAGATGTTCTTCAGAGTCTGACTCCTCCCAAGATAAACAGACACT
GCTTGTGGAATTTCTGTGGAGCCATACTACAGAGAGCATGTGCGTGGGATATATGTCAGCCCAGGACGGC
AAAGCCAAGACTCACATTTCACGACTCCCTCCTGGTGCTGTGGCAGGACAGTCTGTTGCCATCGAAGGTG
GGGTTTGCCGCCTGGAGAGCCCCGTGAACTGA

Translation (383 aa):
MIMEKGMNSGEGLPSRSSQASAAKVTVKELETQQPCKEKRGGFVLVHAGAGYHSESKAKEYKHVCKRACQ
KAIEKLQAGALATDAVAAALVELEDSPFTNAGIGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPV
SVAHRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPSTMTTRFSLAAFKRNKRKLELAERVE
TDFIQLKRRRQSSAKENDSGTLDTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAENTGA
QNPYSTAVSTSGSPFLACEDGVLGGVIVLRSCRCSSESDSSQDKQTLLVEFLWSHTTESMCVGYMSAQDG
KAKTHISRLPPGAVAGQSVAIEGGVCRLESPVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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